YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311970, pin...
Organism:	Drosophila melanogaster
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311970, pin....

Description	E-value	Query Range	Subject Range
gi\|118792527, gi... - gi\|118792527\|ref\|XP_320369.3\| ENSANGP00000022827 [Anopheles gambiae str. PEST], gi\|116116941\|gb\|EAA4...	243.0	[0..5]	[273..16]
gi\|92879194 - gi\|92879194\|gb\|ABE85412.1\| Cellular retinaldehyde-binding/triple function, N-terminal [Medicago trun...	240.0	[0..5]	[246..64]
gi\|51971036 - gi\|51971036\|dbj\|BAD44210.1\| putative phosphatidylinositol/ phosphatidylcholine transfer protein [Ara...	239.0	[0..5]	[246..6]
gi\|50907791, gi\|... - gi\|50907791\|ref\|XP_465384.1\| putative SEC14 cytosolic factor [Oryza sativa (japonica cultivar-group)...	237.0	[0..4]	[250..63]
gi\|14486705 - gi\|14486705\|gb\|AAK63247.1\|AF367433_1 phosphatidylinositol transfer-like protein III [Lotus japonicus...	235.0	[0..5]	[246..67]
gi\|108875736, gi... - gi\|157118369\|ref\|XP_001659081.1\| hypothetical protein AaeL_AAEL008275 [Aedes aegypti], gi\|108875736\|...	235.0	[0..6]	[273..10]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSRSSSSKR QVATTDGDPE RVLAQVQDLS DWLVANPQIN GCNTFENLHF FLRTSKFDVE  60
   61 RAKKKLKTFY QMRAERTEWF DNRDPQLPEI QDLLKLGVFL PIGPDAEQRM VVVIRTAAHD 120
  121 PKLHSQNNVF KTSKMILDLL LKLDPETCAR GMVAILDMQG VQLGHALQMN PKLIKRSVES 180
  181 WTAYPCQPKL LEFTNAPRHV NFFLNTFRIF MTPKIRSRLF VRREGTSVSC DQLPKELGGQ 240
  241 GLSYMELSVK WKQLVEENAD FYVEQDKYKS KLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1oipA
Description:	The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
vitamin E binding	3.4750898323716	bayes_pls_golite062009
binding	0.574651955133353	bayes_pls_golite062009
vitamin binding	0.27562420820907	bayes_pls_golite062009
retinal binding	0.23509753179789	bayes_pls_golite062009
phosphatidylinositol transporter activity	1.85158204979441E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: