Protein: | CG17838-PF |
Organism: | Drosophila melanogaster |
Length: | 529 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17838-PF.
Description | E-value | Query Range |
Subject Range |
|
388.0 | [0..1] | [529..43] |
Region A: Residues: [1-156] |
1 11 21 31 41 51 | | | | | | 1 MAEGNGELLD DINQKADDRG DGERTEDYPK LLEYGLDKKV AGKLDEIYKT GKLAHAELDE 60 61 RALDALKEFP VDGALNVLGQ FLESNLEHVS NKSAYLCGVM KTYRQKSRAS QQGVAAPATV 120 121 KGPDEDKIKK ILERTGYTLD VTTGQRKYGG PPPHWE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [157-243] |
1 11 21 31 41 51 | | | | | | 1 GNVPGNGCEV FCGKIPKDMY EDELIPLFEN CGIIWDLRLM MDPMTGTNRG YAFVTFTNRE 60 61 AAVNAVRQLD NHEIKPGKCL KINISVP |
Detection Method: | |
Confidence: | 13.69897 |
Match: | 2dguA |
Description: | No description for 2dguA was found. |
Region A: Residues: [244-444] |
1 11 21 31 41 51 | | | | | | 1 NLRLFVGNIP KSKGKDEILE EFGKLTAGLY EVIIYSSPDD KKKNRGFCFL EYESHKAASL 60 61 AKRRLGTGRI KVWGCDIIVD WADPQEEPDE QTMSKVKVLY VRNLTQDVSE DKLKEQFEQY 120 121 GKVERVKKIK DYAFIHFEDR DSAVEAMRGL NGKEIGASNI EVSLAKPPSD KKKKEEILRA 180 181 RERRMMQMMQ ARPGIVGNLS P |
Detection Method: | |
Confidence: | 5.15 |
Match: | 1cvjA |
Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA binding | 2.55209579427288 | bayes_pls_golite062009 |
binding | 2.12674248708253 | bayes_pls_golite062009 |
nucleic acid binding | 1.64322098035939 | bayes_pls_golite062009 |
mRNA binding | 1.10126462659919 | bayes_pls_golite062009 |
Region A: Residues: [445-529] |
1 11 21 31 41 51 | | | | | | 1 THPSIMSLTP MRPGARMPLR TPIPREYVVG KRKFDGGHQN PADVKRRYPS GLIGNGGSWG 60 61 SLPLPQQPLG TNGEQWYMDT FSAWS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.