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View Structure Prediction Details

Protein: cal1-PA
Organism: Drosophila melanogaster
Length: 979 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cal1-PA.

Description E-value Query
Range
Subject
Range
gi|125773427, gi... - gi|54637706|gb|EAL27108.1| GA18691 [Drosophila pseudoobscura pseudoobscura], gi|125773427|ref|XP_001...
gi|125773427|ref... - GA18691-PA [Drosophila pseudoobscura], GA18691 [Drosophila pseudoobscura pseudoobscura]
320.0 [0..1] [978..1]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAVVDEET LEAMVYERSK AWSSKMADFA SLEDGMEIDV AEFDNLFHGE DEDPDLDDVA  60
   61 KEAVEDNVPD EAKLEMGHIN ATSVTELTLI LCANEDNEAK AEIEEILNQT VPVVEEHKRK 120
  121 WREAGLDRIL DTFDEKQIEH HVGRWMRRHN SVYLEASPPK YLPPHHNSIS DESDESMHSI 180
  181 DTARYIQQSR RRNAHMTNKN MTTIKMYRKH SHKRDELRAK YAYGDEQEHR HHM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAVLLRRRER ERQLAYLAST PMQCVYSSGH HMRRKNLRKR RINSWMFDSA SSSEEDTSFG  60
   61 GCDCHSCRRH YALSRSVYQS CPYGRGQREY HHRQMASRTM HTMRRQHTFD MEMDLRPRLP 120
  121 ENECSCCNSD RLCSNVIHIA NSSTEEWVVE NRSNHLTQET QEKTRKQKHQ PMDARKVSHQ 180
  181 PVCSKGHEQK PLSSKATSVS K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [435-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLSKEKYMQ MFDSESSDED NALAKKGLLC CSDKKKGMTF PTPNAAGKIT HPTSSAKKAI  60
   61 RKEARPNGLA QIQEEGPTAT NSPIESTYLP VAHMKSVSID GSSGTSATFE SPAKKAPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [553-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGIRETSPLN GNELQQLIST IPIADEKASS LMEKVDNCIG RESFDDRNKD FMHMENSSTK  60
   61 TAVEKSTKQK RVSGKKSEIP KSIITNNEIL EKNSTETLSE KQVAAKAKKQ SVRKTGATGK 120
  121 PSTSRLKKSE KTKTTSSVTS TSKLEQVREE ESDVSSEVLA KPKPQCSTTA SILKQGGDGA 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [733-827]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSEDDLQIA LAMSKATYKE EQQKRKKTKR EPSNKQPQSP AEKSMTVFNN QSVACNSTAL  60
   61 ANDTACYRVL PKRRGVKRAA AVSTTEEKTA TNSSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [828-979]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTSSLEEMG SPTGGDPDCT VVTSTTGCEP PASERQEIPA TIKITKRGIL LHSPSAPEGA  60
   61 SFTLTEQGLG KIIGERWARK YLKYHIGSRS FDSRHSVYYQ PTPQLAAALS APQDAQNIGN 120
  121 ISGSSASDDD IFEQINRYGT VYSILENNSG DK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle