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View Structure Prediction Details

Protein: cal1-PA
Organism: Drosophila melanogaster
Length: 979 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cal1-PA.

Description E-value Query
Range
Subject
Range
gi|125773427, gi... - gi|54637706|gb|EAL27108.1| GA18691 [Drosophila pseudoobscura pseudoobscura], gi|125773427|ref|XP_001...
gi|125773427|ref... - GA18691-PA [Drosophila pseudoobscura], GA18691 [Drosophila pseudoobscura pseudoobscura]
320.0 [0..1] [978..1]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAVVDEET LEAMVYERSK AWSSKMADFA SLEDGMEIDV AEFDNLFHGE DEDPDLDDVA  60
   61 KEAVEDNVPD EAKLEMGHIN ATSVTELTLI LCANEDNEAK AEIEEILNQT VPVVEEHKRK 120
  121 WREAGLDRIL DTFDEKQIEH HVGRWMRRHN SVYLEASPPK YLPPHHNSIS DESDESMHSI 180
  181 DTARYIQQSR RRNAHMTNKN MTTIKMYRKH SHKRDELRAK YAYGDEQEHR HHM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAVLLRRRER ERQLAYLAST PMQCVYSSGH HMRRKNLRKR RINSWMFDSA SSSEEDTSFG  60
   61 GCDCHSCRRH YALSRSVYQS CPYGRGQREY HHRQMASRTM HTMRRQHTFD MEMDLRPRLP 120
  121 ENECSCCNSD RLCSNVIHIA NSSTEEWVVE NRSNHLTQET QEKTRKQKHQ PMDARKVSHQ 180
  181 PVCSKGHEQK PLSSKATSVS K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [435-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLSKEKYMQ MFDSESSDED NALAKKGLLC CSDKKKGMTF PTPNAAGKIT HPTSSAKKAI  60
   61 RKEARPNGLA QIQEEGPTAT NSPIESTYLP VAHMKSVSID GSSGTSATFE SPAKKAPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [553-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGIRETSPLN GNELQQLIST IPIADEKASS LMEKVDNCIG RESFDDRNKD FMHMENSSTK  60
   61 TAVEKSTKQK RVSGKKSEIP KSIITNNEIL EKNSTETLSE KQVAAKAKKQ SVRKTGATGK 120
  121 PSTSRLKKSE KTKTTSSVTS TSKLEQVREE ESDVSSEVLA KPKPQCSTTA SILKQGGDGA 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [733-827]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSEDDLQIA LAMSKATYKE EQQKRKKTKR EPSNKQPQSP AEKSMTVFNN QSVACNSTAL  60
   61 ANDTACYRVL PKRRGVKRAA AVSTTEEKTA TNSSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [828-979]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTSSLEEMG SPTGGDPDCT VVTSTTGCEP PASERQEIPA TIKITKRGIL LHSPSAPEGA  60
   61 SFTLTEQGLG KIIGERWARK YLKYHIGSRS FDSRHSVYYQ PTPQLAAALS APQDAQNIGN 120
  121 ISGSSASDDD IFEQINRYGT VYSILENNSG DK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle