| Protein: | ns1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 581 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ns1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
345.0 | [0..1] | [581..1] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MALKRLKTKK SKRLTGRLKH KIEKKVRDHN KKERRAAKKN PKKGSKKQKL IQIPNICPFK 60
61 DDILKEVEEA KQ
|
| Detection Method: |  |
| Confidence: | 14.013228 |
| Match: | PF08701.2 |
| Description: | No description for PF08701.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-417] |
1 11 21 31 41 51
| | | | | |
1 RQEAERLARR EAFKAEREQN KFKTLESMVE DADMRSTVHG IMHENDAQDQ DEKKYKNAVT 60
61 KEQSLKQYFK EFRKVIENAD VVLEVVDARD PLGTRCNEVE RAVRGAPGNK RLVLVLNKAD 120
121 LVPRENLNNW IKYFRRSGPV TAFKASTQDQ ANRLGRRKLR EMKTEKAMQG SVCIGAELLM 180
181 SMLGNYCRNK GIKTSIRVGV VGIPNVGKSS IINSLTRGRS CMVGSTPGVT KSMQEVELDS 240
241 KIKLIDCPGI VFTSGGENSH AVLKNAQRVG DVKDPFTIAE SVLKRASKEY FCTMYDITNY 300
301 DTFEEFFAKK AARMGKFLKK GVPDVVAAAR SVLNDWNTGK IKYCT
|
| Detection Method: | |
| Confidence: | 62.522879 |
| Match: | 2hjgA |
| Description: | No description for 2hjgA was found. |
|
Region A: Residues: [418-581] |
1 11 21 31 41 51
| | | | | |
1 QPPEVQEGQS VHISASIVHS EAREFDVENF ESMETEILEH CAVKTDDIME ITSTGPLEIR 60
61 QPREEAEPAD KITASLVIDE KEKPAKGRKR KLDEEKEKVD PSLLLEENQS LNKGIKQMQK 120
121 LKKKQNVRNE KKISKITDVL DSFSLGPSSS KAEKYDFDED YVIE
|
| Detection Method: | |
| Confidence: | 44.30103 |
| Match: | 1egaA |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.56635640666012 | bayes_pls_golite062009 |
| binding | 1.9759530321894 | bayes_pls_golite062009 |
| nucleic acid binding | 0.814319647681917 | bayes_pls_golite062009 |
| structural molecule activity | 0.75789816397165 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.710783021654704 | bayes_pls_golite062009 |
| protein binding | 0.523813050066193 | bayes_pls_golite062009 |
| DNA binding | 0.37695535646473 | bayes_pls_golite062009 |
