| Protein: | sra-PA, FBpp0310844 |
| Organism: | Drosophila melanogaster |
| Length: | 292 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sra-PA, FBpp0310844.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..90] | [292..29] |
|
|
319.0 | [0..90] | [290..32] |
|
|
318.0 | [0..90] | [290..32] |
|
|
316.0 | [0..90] | [290..29] |
|
|
314.0 | [0..90] | [290..29] |
|
|
307.0 | [0..106] | [290..1] |
|
|
307.0 | [0..55] | [292..1] |
|
|
306.0 | [0..106] | [290..44] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MSDAAKSNNN ASADAPDPTT PDATGEADAA NAATPTTPRG NHNNNNSANG RSKNKLKSTQ 60
61 NSSGGGSIDK LSPDQDIFIN AADGLPNQHP SLPKEGDVDS DTEP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.229 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
|
Region A: Residues: [105-292] |
1 11 21 31 41 51
| | | | | |
1 EVDADSFDDL PTSIIVTNIH SEVFANPELK HAMEELFRTF SESATFQWLR SFRRLRVNYD 60
61 NAIAAANARI KLHQYEFNKK TVITCYFAQP VTPVSNKNLQ PPAPVKQFLI SPPASPPAGW 120
121 EPREEGEPLV NHDLLAALAS LTPGESHELH PQSEDQPAII VHTAMLAETG PGLQVKAPIV 180
181 QTKCPERA
|
| Detection Method: | |
| Confidence: | 34.522879 |
| Match: | 1weyA |
| Description: | Solution structure of RRM domain in calcipressin 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.11118333721636 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| RNA binding | 2.45916448091535 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.9432590957792 | bayes_pls_golite062009 |
| hydrolase activity | 1.69824301409862 | bayes_pls_golite062009 |
| mRNA binding | 1.62410365165765 | bayes_pls_golite062009 |
| transcription regulator activity | 1.24650529385826 | bayes_pls_golite062009 |
| DNA binding | 1.23082363146877 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 0.426324573266235 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0605038543305221 | bayes_pls_golite062009 |
