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View Structure Prediction Details

Protein: gi|74868822, gi|...
Organism: Drosophila melanogaster
Length: 1131 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|74868822, gi|....

Description E-value Query
Range
Subject
Range
gi|16183366 - gi|16183366|gb|AAL13699.1| GH27433p [Drosophila melanogaster]
839.0 [0..133] [1131..20]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGPVSRSSS SSNMTDVSSP AGGAASPVEM STTSSSSAAT TSASSSKPLT NGANKTAIST  60
   61 AAGGVTPGAV PGPGSGAIPA SSSSGNQVKL EHHHRQSNNN RPAVTNRSSE TKLMTPTGSS 120
  121 SSPSQSPSQT QASIQTQTSQ QDRLAKASTT AS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [153-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQDVDEVARL FEEKPEAFEK WLTERAPPEA LSRLQEFIEN RKPHKRPSVT SDLFQQWMAA  60
   61 SPTVQQKSPR SLSNSSASSL P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [234-652]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECRRHLMDLD EGELFMELIR DVANELDIDV LCHKILVNVG LLTHADRGSL FLAKGTPTNK  60
   61 YLVAKLFDVT QKTALKDAVT RASAEEIIIP FGIGIAGMVA QTKQMINIKE AYKDARFNCE 120
  121 IDLKTGYKTN AILCMPICNY EGDIIGVAQI INKTNGCMEF DEHDVEIFRR YLTFCGIGIQ 180
  181 NAQLFEMSVQ EYRRNQILLN LARSIFEEQN NLECLVTKIM TEARELLKCE RCSVFLVDLD 240
  241 CCEASHLEKI IEKPNQPATR AIKSADSFEE KKMRNRFTVL FELGGEYQAA NVSRPSVSEL 300
  301 SSSTLAQIAQ FVATTGQTVN ICDVIEWVRD HNQIRAEDEI DSTQAILCMP IMNAQKKVIG 360
  361 VAQLINKANG VPFTDSDASI FEAFAIFCGL GIHNTQMYEN ACKLMAKQKV ALECLSYHA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.221849
Match: 1mc0A
Description: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
photoreceptor activity 3.2629375889808 bayes_pls_golite062009
binding 2.02315964268807 bayes_pls_golite062009
3',5'-cyclic-GMP phosphodiesterase activity 1.71909707595169 bayes_pls_golite062009
signal transducer activity 1.62289915305968 bayes_pls_golite062009
molecular transducer activity 1.62289915305968 bayes_pls_golite062009
3',5'-cyclic-nucleotide phosphodiesterase activity 1.56682870530548 bayes_pls_golite062009
transcription regulator activity 1.54732950287569 bayes_pls_golite062009
DNA binding 1.4095382462656 bayes_pls_golite062009
nucleic acid binding 1.38037327227791 bayes_pls_golite062009
transcription factor activity 1.10354038063371 bayes_pls_golite062009
phosphoric diester hydrolase activity 0.974415378465889 bayes_pls_golite062009
cyclic-nucleotide phosphodiesterase activity 0.954654206961074 bayes_pls_golite062009
receptor activity 0.875023508303061 bayes_pls_golite062009
protein binding 0.321233885659081 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [653-997]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASQDQTEKL TQDVIAEAES YNLYSFTFTD FELVDDDTCR AVLRMFMQCN LVSQFQIPYD  60
   61 VLCRWVLSVR KNYRPVKYHN WRHALNVAQT MFAMLKTGKM ERFMTDLEIL GLLVACLCHD 120
  121 LDHRGTNNAF QTKTESPLAI LYTTSTMEHH HFDQCVMILN SEGNNIFQAL SPEDYRSVMK 180
  181 TVESAILSTD LAMYFKKRNA FLELVENGEF DWQGEEKKDL LCGMMMTACD VSAIAKPWEV 240
  241 QHKVAKLVAD EFFDQGDLEK LQLNTQPVAM MDRERKDELP KMQVGFIDVI CLPLYRVLCD 300
  301 TFPWITPLYE GTLENRRNWQ DLAEKVEMGL TWIDHDTIDK PVEEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1xozA
Description: Catalytic Domain Of Human Phosphodiesterase 5A In Complex With Tadalafil
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3',5'-cyclic-GMP phosphodiesterase activity 4.32481199053516 bayes_pls_golite062009
3',5'-cyclic-nucleotide phosphodiesterase activity 4.15125151181381 bayes_pls_golite062009
cyclic-nucleotide phosphodiesterase activity 3.66153187976312 bayes_pls_golite062009
phosphoric diester hydrolase activity 3.65984874547256 bayes_pls_golite062009
3',5'-cyclic-AMP phosphodiesterase activity 2.18711955312275 bayes_pls_golite062009
hydrolase activity 1.36457789411074 bayes_pls_golite062009
catalytic activity 1.07048165010262 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.98531713516841 bayes_pls_golite062009
binding 0.783822826539632 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.511207383357891 bayes_pls_golite062009
protein binding 0.162314119157812 bayes_pls_golite062009
pyrophosphatase activity 0.0142153207240233 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.00598267731749835 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.00281137231762851 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [998-1131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AACADEEIKD IEFTVTTLNC NQQSQHGSED SHTPEHQRSG SRLSMKKTGA LGKAVRSKLS  60
   61 KTLYNSMDGS KPKTSLKLLE SHVSEDMDDK SPTSPSQPQA SGSMGRMSAS SSTSSAGGQM 120
  121 VDKSKKRSKL CALL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle