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View Structure Prediction Details

Protein: Ravus-PA
Organism: Drosophila melanogaster
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ravus-PA.

Description E-value Query
Range
Subject
Range
gi|54638224, gi|... - gi|54638224|gb|EAL27626.1| GA14007-PA [Drosophila pseudoobscura], gi|125774457|ref|XP_001358487.1| G...
372.0 [0..1] [359..1]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLQLTQEK LDALRSEYRP RRPCALLKYP RPKTKPEYQA IYPWLLPDET DPHFVFCAVC  60
   61 ECRLSCKRSD LGKHEGSIKH SENAQRKSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAKANNSSFN GSSSGAMKWE DTEDEEGLLQ YGTDPQDDET EDEEEGELDE TEGDCEDDEK  60
   61 RTQELEAQND LETEPVIKQQ RRTSETDSQN SGMLDYLPLH VTINEGPQSL P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [201-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTVSAYPTSS ATATVAPPCR ITIKKVPVHS TPLSGMCQAQ EINSKATITP IHTTPSYAAR  60
   61 PLQSYQLQPL SPITPPRDSL ELFFDSICAT VKNLPPKLAT EGKIRVMQLI GELELRALCE 120
  121 QEALSEVAGL PDLAGNSRSG AAEASGSGQQ NATVASTTK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle