| Protein: | MBD-like-PB |
| Organism: | Drosophila melanogaster |
| Length: | 226 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD-like-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
320.0 | [0..9] | [224..1] |
|
|
320.0 | [0..9] | [224..1] |
|
|
319.0 | [0..9] | [224..1] |
|
|
319.0 | [0..9] | [224..1] |
|
|
317.0 | [0..5] | [224..217] |
|
|
316.0 | [0..9] | [224..1] |
|
|
315.0 | [0..9] | [224..1] |
|
|
313.0 | [0..5] | [224..217] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MQMNPSVTIE RKRVDCSVLP KGWQRDEVRK SGSSANNNAS SNNNSSATAS SNNNNNKVDV 60
61 FYYSRALRTD VSLVPPIRQT ASIFKQPVTV IRNHKQDPAK AKNEPKHGTR EKPKQLFWEK 120
121 RLERLRACHD SG
|
| Detection Method: |  |
| Confidence: | 2.29 |
| Match: | 1ub1A |
| Description: | Solution structure of the matrix attachment region-binding domain of chicken MeCP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 4.18760591157176 | bayes_pls_golite062009 |
| nucleic acid binding | 4.12220776678979 | bayes_pls_golite062009 |
| methyl-CpG binding | 3.81156414745943 | bayes_pls_golite062009 |
| unmethylated CpG binding | 3.56370738937072 | bayes_pls_golite062009 |
| double-stranded methylated DNA binding | 3.47824441288235 | bayes_pls_golite062009 |
| transcription repressor activity | 3.00772108352827 | bayes_pls_golite062009 |
| binding | 2.93005095571864 | bayes_pls_golite062009 |
| transcription regulator activity | 2.91932005830918 | bayes_pls_golite062009 |
| chromatin binding | 2.64216199141626 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.3950556138867 | bayes_pls_golite062009 |
| transcription factor activity | 2.17686009706401 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.16634466999037 | bayes_pls_golite062009 |
| transcription factor binding | 1.48884995645619 | bayes_pls_golite062009 |
| protein binding | 1.38597557698861 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.3122042592049 | bayes_pls_golite062009 |
| DNA secondary structure binding | 1.05571990737816 | bayes_pls_golite062009 |
| four-way junction DNA binding | 0.683632613559968 | bayes_pls_golite062009 |
| nucleotide binding | 0.283389600803272 | bayes_pls_golite062009 |
| RNA binding | 0.186168111758276 | bayes_pls_golite062009 |
| mRNA binding | 0.0296015059393313 | bayes_pls_golite062009 |
|
Region A: Residues: [133-226] |
1 11 21 31 41 51
| | | | | |
1 EELDDISLPK TIRTVGPNVN EQTVLQSVAT ALHMLNAGVH GQSSTKADLT KNAMAFMNPE 60
61 QPLMHAVIIS EDDIRKQEDR VGVARRKLQD ALKT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.316 | N/A | N/A | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.266 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.239 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.239 | N/A | N/A | a.39.1 | EF-hand |
