| Protein: | RnpS1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 374 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RnpS1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
190.0 | [0..1] | [308..10] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MARAQSLAGE GEKEKDNKEK VAKEKDGKAT SGSSRRDRER KRRGSASSSS DSRSSTSDSS 60
61 SSRSSSGSSR SSSSSSSDSS SSSSSSSSDS DRSEKNRRR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-374] |
1 11 21 31 41 51
| | | | | |
1 GGGAAGKDKD KDKPSARSRS RSRTRSPRRV SKSPRPGSKA RKEPERDRDR RSRSRDRARR 60
61 AGSNDRAAAD SNNVKRERSR SASRSRSPRR RGRGSVERTP PPKRRERSRS RTRSPSPKQV 120
121 RIHVGRLTRN VTKDHVFEIF SSFGDVKNVE FPVDRFHPNF GRGVAFVEYA TPEDCESAMK 180
181 HMDGGQIDGQ EITVSPVVLV KQRPPMRRPS PPMRRPQNNR WRSPPQFNRF NNRGGGGGGG 240
241 GGRRQSPMRN RRSPRRRSRS PIRRRRRSNS SDSSR
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
