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View Structure Prediction Details

Protein: Prosbeta3-PA
Organism: Drosophila melanogaster
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Prosbeta3-PA.

Description E-value Query
Range		 Subject
Range
gi|56541012 - gi|56541012|gb|AAH87457.1| Unknown (protein for MGC:99279) [Xenopus laevis]
 203.0 [0..1] [205..1]
gi|50760756 - gi|50760756|ref|XP_418119.1| PREDICTED: similar to Zgc:56374 [Gallus gallus]
 202.0 [0..1] [205..135]
gi|62858119, gi|... - gi|62858119|ref|NP_001016503.1| proteasome (prosome, macropain) subunit, beta type 3 [Xenopus (Silur...
 202.0 [0..1] [205..1]
PSB3_MOUSE - Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
 198.0 [0..1] [205..1]
gi|57091113 - gi|57091113|ref|XP_537658.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome theta ...
 197.0 [0..1] [205..1]
PSB3_RAT - Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1
gi|458731 - gi|458731|dbj|BAA04824.1| proteasome subunit RC10-II [Rattus sp.]
 196.0 [0..1] [205..1]
gi|193788711, gi... - gi|29124577|gb|AAH49010.1| Psmb3 protein [Danio rerio], gi|193788711|ref|NP_001123295.1| proteasome ...
 196.0 [0..1] [205..1]
PSB3_BOVIN - Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
 196.0 [0..1] [205..1]
gi|109114735 - gi|109114735|ref|XP_001084269.1| PREDICTED: proteasome (prosome, macropain) subunit, beta type, 3 is...
CCDS11328.1_1 - null
 196.0 [0..1] [205..1]

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Predicted Domain #1
Region A:
Residues: [1-205] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILAYNGGC VVAMRGKDCV AIATDHRFGI QAQTISTDFK KVFHIGPRMF LGLTGLQTDI  60
   61 LTVRDRLMFR KNLYETRENR EMCPKPFSAM MSSFLYEHRF GPYFIEPVVA GLDPKTMEPF 120
  121 ICNMDLIGCP NAPDDFVVAG TCAEQLYGMC ETLWKPDLEP DQLFEVIAQS IVNAFDRDAM 180
  181 SGWGATVYII EKDKITERTL KTRMD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.30103
Match: 1iruJ
Description: Proteasome beta subunit (catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
endopeptidase activity 6.91642761177919 bayes_pls_golite062009
peptidase activity 6.84511694091156 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 6.5973571808298 bayes_pls_golite062009
hydrolase activity 4.47652590304822 bayes_pls_golite062009
threonine-type endopeptidase activity 2.98214579292788 bayes_pls_golite062009
threonine-type peptidase activity 2.98214579292788 bayes_pls_golite062009
catalytic activity 1.19663085909195 bayes_pls_golite062009
binding 1.18139971903068 bayes_pls_golite062009
nucleic acid binding 0.448212653390607 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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