YRC Public Data Repository - Protein Structure Prediction

Protein:	Cks85A-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cks85A-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|54639561, gi\|... - gi\|54639561\|gb\|EAL28963.1\| GA22037 [Drosophila pseudoobscura pseudoobscura], gi\|125778035\|ref\|XP_001... gi\|54639561\|gb\|E... - GA22037-PA [Drosophila pseudoobscura], GA22037 [Drosophila pseudoobscura pseudoobscura] gi\|195157398, gi... - gi\|195157398\|ref\|XP_002019583.1\| GL12136 [Drosophila persimilis], gi\|194116174\|gb\|EDW38217.1\| GL1213...	146.0	[0..1]	[88..1]
gi\|42551432, gi\|... - gi\|46120526\|ref\|XP_385086.1\| hypothetical protein FG04910.1 [Gibberella zeae PH-1], gi\|42551432\|gb\|E...	144.0	[0..4]	[94..30]
gi\|109505505 - gi\|109505505\|ref\|XP_001054024.1\| PREDICTED: similar to CDC28 protein kinase regulatory subunit 2 [Ra...	144.0	[0..1]	[72..99]
gi\|49073186, gi\|... - gi\|71018253\|ref\|XP_759357.1\| hypothetical protein UM03210.1 [Ustilago maydis 521], ref\|XP_400825.1\| ...	141.0	[0..4]	[93..17]
gi\|108879113, gi... - gi\|157109134\|ref\|XP_001650539.1\| cyclin-dependent kinases regulatory subunit. putative [Aedes aegypt...	141.0	[0..1]	[80..1]
gi\|114051550, gi... - gi\|87248089\|gb\|ABD36097.1\| cyclin-dependent kinase regulatory subunit [Bombyx mori], gi\|114051550\|re...	139.0	[0..1]	[73..1]
AGAP009442-PA - cyclin-dependent kinase regulatory subunit CKS1\|protein_coding\|3R:33502440:33502844:1\|gene:AGAP00944... gi\|118777340, gi... - gi\|118777340\|ref\|XP_307855.3\| AGAP009442-PA [Anopheles gambiae str. PEST], gi\|116132904\|gb\|EAA03636....	138.0	[0..1]	[72..1]
gi\|66534763 - gi\|66534763\|ref\|XP_624975.1\| PREDICTED: similar to Cyclin-dependent kinase subunit 85A CG9790-PA [Ap...	138.0	[0..1]	[73..1]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPADQIQYSE KYFDDNFEYR HVILPPDLAK HVPKAHLMTE TEWRNLGVQQ SPGWVHYMVH  60
   61 APEPHVILFR RKRIPAEDAP QVAAANAAQA IANLCG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1buhB
Description:	CksHs1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cyclin-dependent protein kinase regulator activity	3.97841828100668	bayes_pls_golite062009
binding	2.18113207610794	bayes_pls_golite062009
protein binding	1.97943309243131	bayes_pls_golite062009
protein kinase regulator activity	1.37860707665544	bayes_pls_golite062009
kinase regulator activity	1.32978090173102	bayes_pls_golite062009
protein kinase binding	0.944579171364175	bayes_pls_golite062009
kinase binding	0.867010292327918	bayes_pls_golite062009
ubiquitin binding	0.417755994450789	bayes_pls_golite062009
enzyme binding	0.349317458622834	bayes_pls_golite062009
enzyme regulator activity	0.334428481657021	bayes_pls_golite062009
small conjugating protein binding	0.32298430897304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: