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View Structure Prediction Details

Protein: FBpp0305960, CG1...
Organism: Drosophila melanogaster
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0305960, CG1....

Description E-value Query
Range
Subject
Range
SYR_SHEON - Arginine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=argS PE=3 SV=1
SO4123 - arginyl-tRNA synthetase
444.0 [0..9] [594..1]

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Predicted Domain #1
Region A:
Residues: [1-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPHIGLFT YKICNALKEL TERMIRLRQA ICEQLPHLKN ACYALEVPVK KQQLQNSRRP  60
   61 TVEWILPSAF AQQEVELLDS LKKRRFEAYV ENVRIVPSAG RSAAKIEFQL QPQVFVEQLL 120
  121 QTKEIALHPS PFAAEHIVVE YSSPNIAKPF HVGHLRSTII GNVLANLHEH LGYRTTRLNY 180
  181 LGDWGTQFGL LVLGVQLLNV SDKEMQLSPI ETLYKSYVAA NKAAEQRPEI AQQARDLFAA 240
  241 LEGGTDKSMA KKWQQYRNYT IEDLSKVYNR LGVHFDSYEW ESQYSQQQIQ DVLDKLRSAG 300
  301 LLQPEHDGRE IVVVDGRRIP VIKSNGSTLY LARDIAALLE RLSRFQFSRL LYVVDNGQAD 360
  361 HFNALFKTTA ALDDRLSLEQ LQHVKFGRIY GMSTRQGKAI FLKDVLDEAR DIMREKRNIS 420
  421 ATTRENYNLD DEHVCDILGV SAVLVNVLKQ RRQRDHEFSW QQALQVNGDT GIKLQYTHCR 480
  481 LHSLLDNFRD VDLDDIKPDW KHFSTEPADA LDLLYALARF DQSVWQSKEQ LEACVLVNYL 540
  541 FGLCNATSQA LKRLPVKQES SLEKQLQRLL LFHAAKKTLR HGMELLGLRP LNQM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1bs2A
Description: Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming aminoacyl-tRNA and related compounds 7.16276509815667 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 7.16276509815667 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 7.13957775963187 bayes_pls_golite062009
ligase activity 6.11211476973434 bayes_pls_golite062009
arginine-tRNA ligase activity 5.72854650987135 bayes_pls_golite062009
isoleucine-tRNA ligase activity 3.76808520367507 bayes_pls_golite062009
glutamate-tRNA ligase activity 2.63681738794687 bayes_pls_golite062009
methionine-tRNA ligase activity 2.56893064485672 bayes_pls_golite062009
catalytic activity 2.37674226834122 bayes_pls_golite062009
tyrosine-tRNA ligase activity 1.88984817882585 bayes_pls_golite062009
tryptophan-tRNA ligase activity 1.14187887833901 bayes_pls_golite062009
cysteine-tRNA ligase activity 0.844943947059557 bayes_pls_golite062009
binding 0.485102284225571 bayes_pls_golite062009
nucleic acid binding 0.449504767632354 bayes_pls_golite062009
nucleotidyltransferase activity 0.2293846471193 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.126511747475258 bayes_pls_golite062009
glutamine-tRNA ligase activity 0.118292082006187 bayes_pls_golite062009

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