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View Structure Prediction Details

Protein: Alh-PC
Organism: Drosophila melanogaster
Length: 976 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Alh-PC.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
385.0 [0..3] [975..1011]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDTMDTS QSQPMDVAPA VAVAATSGAA LVDFTAAMVS MAATAEAESA ESNNNHIDMA  60
   61 EYKEHRKNKK KKREKREREG KEHRHHKHRD REHREHRRHR DRDRDKERDR EGHHHHPTHH 120
  121 HPNNSQH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [128-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSASSSPSS ASTTPSATIE YVGGSASASP SYLGGGATGT GAAVGATTTY PHNLKIRFLL  60
   61 SGQRTELSPP THQTSATAEV NAPLASSTSA SIAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASATAASAP PATGTTTLGS SISGNAGSTS SGNSSGVSAT GGAQSAVGSG GYPKTESSKS  60
   61 SGTASAGSGS GSSSNTSSTK HGSNIKDISS SSNQQASTAS SSSAPSLYVS VPLSTANVPG 120
  121 INLPTSSTSS STTSESHSAS SRSSGAQSQH QQQLSNALVG PPMGGSAGAF HGGTTSAGSS 180
  181 SVIQQQSGKS SPALGTLVSG NSGGSIISAS GFPLPSGNLT A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [443-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTESGNLKI SYEKQTTRVQ QLQEQEAPPA RRSRTLDLST ASASSSSPSA VPATTSPLVV  60
   61 LSNQLPLNSV AASSSTGGLK FTYESQTQMD VPMMP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [538-728]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSAIKDSPPS SPGSEIGSAM HSATTAPGSL TGASTAATAQ PGNVRKRGRK AKDATIAAAA  60
   61 AAAAAAAALS NSQQDLKDVR ILQNGASNTP GNPAGSTPTP PATPASSNAV SSASSIITHT 120
  121 AAHMLGNQIN PNSSVAQKLS EQLHMEVQDH SIYTPDSMNS QYAGVPFPGK QRNSTAVPSN 180
  181 ATPAQNPLQS M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [729-811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSGGGMNGNM PIPQSLEQLL ERQWEQGSQF LMEQAQHFDI ASLLNCLHQL QSENLRLEEH  60
   61 VTSLIARRDH LLAVNARLQI PLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [812-976]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIASNTKAEA HAAISTTAAP TTTTTTSTTT ATSTCTTSVI STIASSGNSS TSTIGLGSST  60
   61 SALNAATTIA AAVSLATTAI NTTIPTMANS RPTVAAASSS GVLDYRGPGA TSNSSNSNSS 120
  121 NNTISNSVSN SSSNPTSSSS ASVPPASSMS ISGMSISNAT NLGMR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle