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View Structure Prediction Details

Protein: Alh-PC
Organism: Drosophila melanogaster
Length: 976 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Alh-PC.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
385.0 [0..3] [975..1011]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDTMDTS QSQPMDVAPA VAVAATSGAA LVDFTAAMVS MAATAEAESA ESNNNHIDMA  60
   61 EYKEHRKNKK KKREKREREG KEHRHHKHRD REHREHRRHR DRDRDKERDR EGHHHHPTHH 120
  121 HPNNSQH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [128-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSASSSPSS ASTTPSATIE YVGGSASASP SYLGGGATGT GAAVGATTTY PHNLKIRFLL  60
   61 SGQRTELSPP THQTSATAEV NAPLASSTSA SIAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASATAASAP PATGTTTLGS SISGNAGSTS SGNSSGVSAT GGAQSAVGSG GYPKTESSKS  60
   61 SGTASAGSGS GSSSNTSSTK HGSNIKDISS SSNQQASTAS SSSAPSLYVS VPLSTANVPG 120
  121 INLPTSSTSS STTSESHSAS SRSSGAQSQH QQQLSNALVG PPMGGSAGAF HGGTTSAGSS 180
  181 SVIQQQSGKS SPALGTLVSG NSGGSIISAS GFPLPSGNLT A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [443-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTESGNLKI SYEKQTTRVQ QLQEQEAPPA RRSRTLDLST ASASSSSPSA VPATTSPLVV  60
   61 LSNQLPLNSV AASSSTGGLK FTYESQTQMD VPMMP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [538-728]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSAIKDSPPS SPGSEIGSAM HSATTAPGSL TGASTAATAQ PGNVRKRGRK AKDATIAAAA  60
   61 AAAAAAAALS NSQQDLKDVR ILQNGASNTP GNPAGSTPTP PATPASSNAV SSASSIITHT 120
  121 AAHMLGNQIN PNSSVAQKLS EQLHMEVQDH SIYTPDSMNS QYAGVPFPGK QRNSTAVPSN 180
  181 ATPAQNPLQS M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [729-811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSGGGMNGNM PIPQSLEQLL ERQWEQGSQF LMEQAQHFDI ASLLNCLHQL QSENLRLEEH  60
   61 VTSLIARRDH LLAVNARLQI PLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [812-976]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIASNTKAEA HAAISTTAAP TTTTTTSTTT ATSTCTTSVI STIASSGNSS TSTIGLGSST  60
   61 SALNAATTIA AAVSLATTAI NTTIPTMANS RPTVAAASSS GVLDYRGPGA TSNSSNSNSS 120
  121 NNTISNSVSN SSSNPTSSSS ASVPPASSMS ISGMSISNAT NLGMR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle