YRC Public Data Repository - Protein Structure Prediction

Protein:	snRNP2-PA
Organism:	Drosophila melanogaster
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snRNP2-PA.

Description	E-value	Query Range	Subject Range
snr-4 - small nuclear ribonucleoprotein D2 like status:Confirmed UniProt:Q18786 protein_id:CAB01413.1	135.0	[0..2]	[117..3]
gi\|66500455 - gi\|66500455\|ref\|XP_397475.2\| PREDICTED: similar to CG1249-PA isoform 1 [Apis mellifera]	135.0	[0..2]	[119..3]
gi\|108873936, gi... - gi\|157124529\|ref\|XP_001654090.1\| small nuclear ribonucleoprotein sm d2 [Aedes aegypti], gi\|108873936...	131.0	[0..1]	[119..1]
AGAP003936-PA - small nuclear ribonucleoprotein D2\|protein_coding\|2R:46544959:46545389:-1\|gene:AGAP003936 gi\|116119487, gi... - gi\|119115655\|ref\|XP_318388.2\| AGAP003936-PA [Anopheles gambiae str. PEST], gi\|116119487\|gb\|EAA13684....	131.0	[0..1]	[119..1]
gi\|54638644, gi\|... - gi\|54638644\|gb\|EAL28046.1\| GA11659-PA [Drosophila pseudoobscura], gi\|125775305\|ref\|XP_001358903.1\| G...	129.0	[0..2]	[119..1]
gi\|115928632, gi... - gi\|115928632\|ref\|XP_001177104.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	127.0	[0..3]	[116..4]
gi\|91090234 - gi\|91090234\|ref\|XP_968776.1\| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]	125.0	[0..1]	[118..1]
gi\|42553705, gi\|... - gi\|46125281\|ref\|XP_387194.1\| hypothetical protein FG07018.1 [Gibberella zeae PH-1], gi\|42553705\|gb\|E...	120.0	[0..3]	[109..48]
gi\|157762608 - gi\|157762608\|ref\|XP_001673646.1\| Hypothetical protein CBG23345 [Caenorhabditis briggsae AF16] gi\|39592141, gi\|... - gi\|39592141\|emb\|CAE75361.1\| Hypothetical protein CBG23345 [Caenorhabditis briggsae], gi\|187021090\|em...	119.0	[0..2]	[117..3]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVKPKSEL TPEELARQEE EEFNTGPLSV LTQSVKNNTQ VLINCRNNKK LLGRVKAFDR  60
   61 HCNMVLENVK EMWTELPRTG KGKKKVKPVN KDRFISKMFL RGDSVILVLR NPLATAAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1b34B
Description:	D2 core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: