YRC Public Data Repository - Protein Structure Prediction

Protein:	rev7-PA
Organism:	Drosophila melanogaster
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rev7-PA.

Description	E-value	Query Range	Subject Range
gi\|115390332, gi... - gi\|115390332\|ref\|XP_001212671.1\| mitotic spindle checkpoint component mad2 [Aspergillus terreus NIH2...	240.0	[0..4]	[196..17]
gi\|169780902 - gi\|169780902\|ref\|XP_001824915.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83773655 - gi\|83773655\|dbj\|BAE63782.1\| unnamed protein product [Aspergillus oryzae]	239.0	[0..4]	[196..16]
gi\|40744840, gi\|... - gi\|67524107\|ref\|XP_660115.1\| hypothetical protein AN2511.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	238.0	[0..4]	[196..18]
gi\|60677614 - gi\|60677614\|dbj\|BAD90977.1\| MAD2 [Triticum aestivum]	234.0	[0..4]	[196..14]
gi\|218195086 - gi\|218195086\|gb\|EEC77513.1\| hypothetical protein OsI_16383 [Oryza sativa Indica Group] gi\|215767269, gi... - gi\|215767269\|dbj\|BAG99497.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115459076\|ref...	233.0	[0..4]	[196..14]
gi\|50746731 - gi\|50746731\|ref\|XP_420629.1\| PREDICTED: similar to mitotic feedback control protein Madp2 homolog is...	231.0	[0..4]	[196..15]
MAD2_MAIZE - Mitotic spindle checkpoint protein MAD2 OS=Zea mays GN=MAD2 PE=2 SV=1	231.0	[0..4]	[196..14]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAEIKADII VEAMEVLVNH ILYVRGIYPS HIFKMKRMYN SPIYVSIFPP LNNYLAGVLK  60
   61 SAQELLRRRE LQCLELIVYQ KENEKLESYK MQLETQRSGL PAEDHLMEFE QNMRSVIYKI 120
  121 SQRLNQAPKL PAGSCQFKVH LHTTQEAFIR FSHDSQYQEF PWLQTQKTES QATGRTVYLL 180
  181 PLARVDDLGL KMDVLIVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1klqA
Description:	The spindle assembly checkpoint protein mad2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.24288011094963	bayes_pls_golite062009
protein binding	0.600501436835008	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: