| Protein: | Nmdar1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 997 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nmdar1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
557.0 | [0..2] | [997..8] |
|
Region A: Residues: [1-532] |
1 11 21 31 41 51
| | | | | |
1 MAMAEFVFCR PLFGLAIVLL VAPIDAAQRH TASDNPSTYN IGGVLSNSDS EEHFSTTIKH 60
61 LNFDQQYVPR KVTYYDKTIR MDKNPIKTVF NVCDKLIENR VYAVVVSHEQ TSGDLSPAAV 120
121 SYTSGFYSIP VIGISSRDAA FSDKNIHVSF LRTVPPYYHQ ADVWLEMLSH FAYTKVIIIH 180
181 SSDTDGRAIL GRFQTTSQTY YDDVDVRATV ELIVEFEPKL ESFTEHLIDM KTAQSRVYLM 240
241 YASTEDAQVI FRDAGEYNMT GEGHVWIVTE QALFSNNTPD GVLGLQLEHA HSDKGHIRDS 300
301 VYVLASAIKE MISNETIAEA PKDCGDSAVN WESGKRLFQY LKSRNITGET GQVAFDDNGD 360
361 RIYAGYDVIN IREQQKKHVV GKFSYDSMRA KMRMRINDSE IIWPGKQRRK PEGIMIPTHL 420
421 RLLTIEEKPF VYVRRMGDDE FRCEPDERPC PLFNNSDATA NEFCCRGYCI DLLIELSKRI 480
481 NFTYDLALSP DGQFGHYILR NNTGAMTLRK EWTGLIGELV NERADMIVAP LT
|
| Detection Method: |  |
| Confidence: | 52.0 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [533-673] |
1 11 21 31 41 51
| | | | | |
1 INPERAEYIE FSKPFKYQGI TILEKKPSRS STLVSFLQPF SNTLWILVMV SVHVVALVLY 60
61 LLDRFSPFGR FKLSHSDSNE EKALNLSSAV WFAWGVLLNS GIGEGTPRSF SARVLGMVWA 120
121 GFAMIIVASY TANLAAFLVL E
|
| Detection Method: | |
| Confidence: | 2.58 |
| Match: | 1p7bA |
| Description: | Inward rectifier potassium channel Kirbac1.1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| voltage-gated potassium channel activity | 5.71321890307691 | bayes_pls_golite062009 |
| potassium channel activity | 5.64444696546351 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 5.60647618241473 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 5.2851122235184 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 5.12283267339494 | bayes_pls_golite062009 |
| voltage-gated channel activity | 5.09999533279013 | bayes_pls_golite062009 |
| cation channel activity | 5.09551684793166 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.88789838906314 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.80939024913503 | bayes_pls_golite062009 |
| ion channel activity | 4.50553553033114 | bayes_pls_golite062009 |
| gated channel activity | 4.47618233399604 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.43208330555032 | bayes_pls_golite062009 |
| substrate-specific channel activity | 4.39833449623615 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 4.38139555510307 | bayes_pls_golite062009 |
| channel activity | 4.38139555510307 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 3.1911169166902 | bayes_pls_golite062009 |
| transporter activity | 2.77619896060397 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.65613366364107 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.60593795082679 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.41007732307954 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.41007732307954 | bayes_pls_golite062009 |
|
Region A: Residues: [674-811] |
1 11 21 31 41 51
| | | | | |
1 RPKTKLSGIN DARLRNTMEN LTCATVKGSS VDMYFRRQVE LSNMYRTMEA NNYATAEQAI 60
61 QDVKKGKLMA FIWDSSRLEY EASKDCELVT AGELFGRSGY GIGLQKGSPW TDAVTLAILE 120
121 FHESGFMEKL DKQWIFHG
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 1pb7A |
| Description: | N-methyl-D-aspartate receptor subunit 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [812-893] |
1 11 21 31 41 51
| | | | | |
1 HVQQNCELFE KTPNTLGLKN MAGVFILVGV GIAGGVGLII IEVIYKKHQV KKQKRLDIAR 60
61 HAADKWRGTI EKRKTIRASL AM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [894-997] |
1 11 21 31 41 51
| | | | | |
1 QRQYNVGLNS THAPGTISLA VDKRRYPRLG QRLGPERAWP GDAADVLRIR RPYELGNPGQ 60
61 SPKVMAANQP GMPMPMLGKT RPQQSVLPPR YSPGYTSDVS HLVV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
