Protein: | gsb-n-PA |
Organism: | Drosophila melanogaster |
Length: | 449 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gsb-n-PA.
Description | E-value | Query Range |
Subject Range |
|
240.0 | [0..22] | [291..1] |
Region A: Residues: [1-175] |
1 11 21 31 41 51 | | | | | | 1 MDMSSANSLR PLFAGYPFQG QGRVNQLGGV FINGRPLPNH IRLKIVEMAA SGVRPCVISR 60 61 QLRVSHGCVS KILNRYQETG SIRPGVIGGS KPKVTSPEIE TRIDELRKEN PSIFSWEIRE 120 121 KLIKEGFADP PSTSSISRLL RGSDRGSEDG RKDYTINGIL GGRDSDISDT ESEPG |
Detection Method: | |
Confidence: | 45.30103 |
Match: | 1pdnC |
Description: | Paired protein (prd) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
protein binding | 1.88087411289001 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
protein deacetylase activity | 0.0943601066056998 | bayes_pls_golite062009 |
histone deacetylase activity | 0.0802156998596484 | bayes_pls_golite062009 |
Region A: Residues: [176-288] |
1 11 21 31 41 51 | | | | | | 1 IPLKRKQRRS RTTFTAEQLE ALERAFSRTQ YPDVYTREEL AQTTALTEAR IQVWFSNRRA 60 61 RLRKHSGGSN SGLSPMNSGS SNVGVGVGLS GATAPLGYGP LGVGSMAGYS PAP |
Detection Method: | |
Confidence: | 7.39794 |
Match: | 2cueA |
Description: | Solution structure of the homeobox domain of the human paired box protein Pax-6 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
protein binding | 1.88087411289001 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
protein deacetylase activity | 0.0943601066056998 | bayes_pls_golite062009 |
histone deacetylase activity | 0.0802156998596484 | bayes_pls_golite062009 |
Region A: Residues: [289-449] |
1 11 21 31 41 51 | | | | | | 1 GTTATGAGMN DGVHHAAHAP SSHHSAATAA AAAHHHTQMG GYDLVQSAAQ HGFPGGFAQP 60 61 GHFGSQNYYH QDYSKLTIDD FSKLTADSVS KISPSLHLSD NYSKLEAPSN WSQAAYHAAA 120 121 NYNAHVAQHQ LNDYAAAAAH GNPASAYSHP LPTQGQAKYW S |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.