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View Structure Prediction Details

Protein: MED23-PA
Organism: Drosophila melanogaster
Length: 1439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED23-PA.

Description E-value Query
Range
Subject
Range
gi|114609395 - gi|114609395|ref|XP_527503.2| PREDICTED: cofactor required for Sp1 transcriptional activation, subun...
2158.0 [0..1] [1357..137]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQVIDTVN EFLKVDSLDE AFVSVIVFKP NTEQERATRF ANDLVTAFGN VAQENREQVL  60
   61 RLYLLRAAGA SGYHIKVLMA ALVKLVDAHV ITARMLCDKV LMCEKLDFEH RTFWIESFRL 120
  121 IKRVIV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVDYKGVREI MKVCRDKAQW FPLNVNVTYM PQLLAVEDIL RFIFDRNNCL LPAYFIANEI  60
   61 MRPFPYHWKL NRLMTDFVEE FRTTAQMVSI IGHASMLPIV EHFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [231-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YADHMMNSWR LDHNTLKFNF KGSLPYEPEL LEEQKPLLRY VLEQPYSREM VSQMLNLQK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [290-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQKQRYNALE EQLVNLIVQA MEMTEANDAT AGSGFNSSDE QITPYEWMWL HLSSQLIYFV  60
   61 LFQFVSFMHI VLALHEKLSK LELRKGRDQL MWILLQFISG SIQKNPITNF LPVFRLFDLL 120
  121 YPELEPLKLP DINKSSMVRH MAPICVWIHL MKKARVENMN ITR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [453-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLPIALKNHY DFLQHLVTAN TMMNMTLGND FRIILICNAY STNQEYFGRP MGLLLDALNG  60
   61 TSKSPNGGQI PAVTFSVTVL DSLTVHSKMS L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [544-661]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHSFVTQMLK QAQSKGQVPA AALLETYARL LVYTEIESLG IKGFLSQLMP TVFKNHAWAM  60
   61 LHTLMEMFSY RLHHVPTHYR VQLLSLLHSL SSVPQTNKMQ LNLCFESTAL RLITSIGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [662-783]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEFQPQFSRY FNDKSPGAVA SNESEELNRV LILTLARSMH VHGGGDEMQG WCKDFLSNII  60
   61 QHTPHSWPMH SLACFPPALN EYFTQNNQPP ENKQQLKKAV EEEYRTWTSM TNENDIIAHF 120
  121 LR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [784-929]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTNPLFLCL LFKIIWETEN ISPVAYKILE GISARALSTH LRKFCDYLVA EVASSSDGRD  60
   61 FIHKCVDTIN NMIWKFNVVT IDRVVLCLAL RTHEGNEAQV CFLIIQLLLL KASELRNRVQ 120
  121 EFCKDNNPDH WKQSNWQDKH LSFHQK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [930-1147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPEKFALDES ASQIPLPVYF SNVCLRFLPV LDVVVHRFIE LTITNVHQIL GFILDHLSIL  60
   61 YKFHDRPITY LYNTLHYYER ILRDRPALKK KLVGAITSAF SEIRPPNWSV SEPYKVYLQS 120
  121 QDSLWTPELS YYMSLIRRLA DTISGKNVFY STDWRFNEFP NAPTHALYVT CVELLGLPVA 180
  181 PPLVASNLID VIVSGYAVIP QKDIHSYINA VGIVLAAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1148-1274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPYWSGIYD RLQDMLNTPN MLNWTYRFNA FELFNFKTVR EAMLEKTYAV VLAVAHSVFH  60
   61 HMGAFKLAAM TRYLKEKLKP CVRTEQQLLY LCHVFGPFLQ RIELEKPNAV AGIAVLLYEI 120
  121 LEIVDKH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1275-1439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGPKPLQYMD QICDFLYHIK YIHVGNIIKN ESEAIIKRLR PLLQMRLRFI THLNLEDIHT  60
   61 EKINDNTSNN AITSQTQSPM QTQHQQQPQQ PHQQQQQQQQ QQQQQQQQQQ QQQQMQQQQI 120
  121 NAVQTTSVPL GSGGNLQQQQ QINQQQQMYM QHMQQHQHMQ NMRHN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle