| Protein: | Sox15-PA |
| Organism: | Drosophila melanogaster |
| Length: | 784 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sox15-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
290.0 | [0..1] | [784..1] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MEPSYDHEHP HHLLTNYNSK KYPHVSRTPE YSHSTGSDYP EHGGYLTDGR LMHESNSDAG 60
61 IYHVRQGSEH SSPSLHSPAI QSSGYENEHL NEAVLAAHSH SHSPMPMVSS AYVGGGTASG 120
121 SLINSNIPLL GGGG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [135-298] |
1 11 21 31 41 51
| | | | | |
1 NSVLNKFLSH PHAGMVGGGT GQMEDCTSHS PIEAASMWSY DYKGDLCAPN CGYLERHKPL 60
61 PADLKYRPGG TQSKSAKESR IRRPMNAFMV WAKIERKKLA DENPDLHNAD LSKMLGKKWR 120
121 SLTPQDRRPY VEEAERLRVI HMTEHPNYKY RPRRRKQSKL RAMQ
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1o4xB |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| nucleic acid binding | 4.70730250099648 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.84606709725198 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| transcription repressor activity | 1.53825678633232 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| chromatin binding | 0.830960835937769 | bayes_pls_golite062009 |
|
Region A: Residues: [299-390] |
1 11 21 31 41 51
| | | | | |
1 PGGKEQSESS PNPGTGGSKS NPKLATPPLA TASSSYTTPT DESTCNSTNQ NHGQSTPGGL 60
61 YEQPLKPTYS PSSVDCYSNA DSTEQIESLA AN
|
| Detection Method: | |
| Confidence: | 1.22 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [391-490] |
1 11 21 31 41 51
| | | | | |
1 CPPALLNESS PTGGGYDNSL LLKKLTKPSP SRAAKSRQEK LAKSEEKNKG SQSQGQSQQG 60
61 IYAATYPLAP TSVAVVAARG MYVTCNNRGL LDHGHSVKGT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [491-614] |
1 11 21 31 41 51
| | | | | |
1 FYPPVSVSED DNSTSMRNSI SALQQHCNVV TSTPSSSGGT MPTSEMSSYT VSMADNCGNL 60
61 RLSMNELSGN EYLPSANAYG MQYEDFLRYQ SNDMDYSTSA VEHKETTSDS ASGQKCLKYP 120
121 DTNQ
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [615-784] |
1 11 21 31 41 51
| | | | | |
1 NYDDYEAEAY SNAMLPATAA SYYTQLPYPP TSLAAFPLQL AVPFQQTTSG AYGAQPIQSG 60
61 YLHYGNYGGY EGMAQSQPQN QAPVHHQQAS HSAPPSLSVP PNQTVTSNSA AISMQQHHHH 120
121 HFGPAPGMVG VGVGVGVGVG VGEMLFEQQQ RKDDEISNIL AGVRKTCYSN
|
| Detection Method: | |
| Confidence: | 1.0 |
| Match: | 1c82A |
| Description: | Hyaluronate lyase |
Matching Structure (courtesy of the PDB): |
|
