Protein: | cg-PB |
Organism: | Drosophila melanogaster |
Length: | 772 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cg-PB.
Description | E-value | Query Range |
Subject Range |
|
923.0 | [0..1] | [770..413] |
Region A: Residues: [1-203] |
1 11 21 31 41 51 | | | | | | 1 MCAAQNPPPF GYTWGFADNG NRAAESVLEI SPNINYTVSG ESMPYLLSTD GSLAVQKDVK 60 61 GLTAGGKNNV VRRMFVVNDP SFPPGTQRVI TAGGASTVVK KQDNNQQVLS LDKNYLLVDP 120 121 ATAAAAAAAA GGDSGLAHHH TLTNGSIVDA KTGQTVLTAG SAAAKSHFSS IGALHLTQEE 180 181 CNEILIKRAI AAGHHQTHTI TAA |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [204-445] |
1 11 21 31 41 51 | | | | | | 1 DGSHHHASGG TPSDILPGIS VQVQKVIQGL EDNEDSQGEA PNLKLEPGTL ELSPKTELQE 60 61 SMHFSETDAT IKKERPYSCD ECGKSFLLKH HLTTHARVHT GERPHICTHC GKSFAHKHCL 120 121 NTHLLLHSTE RPYQCQECKK SFTLKHHLLT HSRVHSRERP FVCQECGRAF PLKRHLVTHS 180 181 KFHAGERPYV CEECGESFAQ ENHLIMHSRF HGSLNPFVCA ECGASFPRKF QLVNHGRIHG 240 241 KI |
Detection Method: | |
Confidence: | 62.0 |
Match: | 2i13A |
Description: | No description for 2i13A was found. |
Region A: Residues: [446-618] |
1 11 21 31 41 51 | | | | | | 1 PHSCTVCGKE FLQKRTLVSH MRRVHTGEQA HPCVSCGEGF LTKAELHQHV RTAHNGVNPN 60 61 TSSATIIANQ QLQQAHHHQA GQQTHPQTIT VVSNPGNSTL LTVSTTDANG VARPQFVCRE 120 121 CGSAFNSREA LALHLRLHTG DKSLMTDLCA LTAALPGHFL STASLNPGTV VTA |
Detection Method: | |
Confidence: | 18.69897 |
Match: | 2gliA |
Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
binding | 3.10743787485868 | bayes_pls_golite062009 |
transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.48624530884061 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.18599503594288 | bayes_pls_golite062009 |
protein binding | 1.00484935878505 | bayes_pls_golite062009 |
transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
Region A: Residues: [619-701] |
1 11 21 31 41 51 | | | | | | 1 NPNLVGQSPV PVQIISSTGQ VMSQTTLVQA ANSTHPQAVV TAVPTMPVHG QQQHLQHVAQ 60 61 QQQQQQQQQQ QQQQHVVSVA PAN |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [702-772] |
1 11 21 31 41 51 | | | | | | 1 KPKSHFCASC GKGFAAKHGL MQHNRRHPNG GCTVRTHVCE CGKAFFQKNH LMLHQRQHLE 60 61 TKPAISQQQV C |
Detection Method: | |
Confidence: | 8.221849 |
Match: | 1x6hA |
Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
binding | 3.10743787485868 | bayes_pls_golite062009 |
transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.48624530884061 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.18599503594288 | bayes_pls_golite062009 |
protein binding | 1.00484935878505 | bayes_pls_golite062009 |
transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |