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View Structure Prediction Details

Protein: stj-PB
Organism: Drosophila melanogaster
Length: 1218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stj-PB.

Description E-value Query
Range
Subject
Range
gi|54636784, gi|... - gi|54636784|gb|EAL26187.1| GA11538-PA [Drosophila pseudoobscura], gi|125810749|ref|XP_001361608.1| G...
1027.0 [0..1] [1218..1]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSRLLAWW RLCLGLLSVL VCLAPCVNLQ PAENINYNLV HSWADKLGME LFHLGDFITR  60
   61 RKEVQESFKD AKVVSRNGAS IVDSMAKEIE MMMDLKVSAV RRIMDTAENT ALSHQNDMAD 120
  121 KMFSYYSAKE MLEPGDPVPP IPTPAPDMDK DIGEPLIYVQ PKVVVLEPRP E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1u0oC
Description: The mouse von Willebrand Factor A1-botrocetin complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [172-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHNTPVNFSV SSVHVPVNVF DRAPDVIKAI QWSENLDQIF RDNYKNDPTL SWQFFGSSTG  60
   61 FMRQFPASKW RKDVPVDLYD CRLRSWYMEA ATSPKDIVIL MDGSGSMLGQ RLDIAKHVVN 120
  121 TILDTLGTND FVNIFTFDKE VSPVVPCFED TLIQANLGNI RELKEGIELF RPKSIANYTA 180
  181 ALTKAFELLE ETKLSSRGAQ CNQAIMIIGD GAPENNREVF ELHNWRDPPY KPVRVFTYLI 240
  241 GKEVANWDDI RWMACENQGY YVHLSDTAEV REMVLNYIPV MARPLVLGRH DHPVIWSQVY 300
  301 ADIEDTKLSD YLWDINQCEY QKADVLEYWQ VHDRMLEPSE MHRRKYRRMK ETWNQPVDSN 360
  361 VYQFMTTVSM PIYDRRENAT RIANILGVAG TDVPINEIKK LLSPFTLGVN GYAFIVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 2ok5A
Description: No description for 2ok5A was found.

Predicted functions:

Term Confidence Notes
transmembrane receptor activity 3.33848773229348 bayes_pls_golite062009
receptor activity 3.28133222509881 bayes_pls_golite062009
molecular transducer activity 3.08213334732736 bayes_pls_golite062009
signal transducer activity 3.08213334732736 bayes_pls_golite062009
integrin binding 2.40435388753557 bayes_pls_golite062009
binding 2.35148208532935 bayes_pls_golite062009
protein complex binding 2.17431257567104 bayes_pls_golite062009
glutamate receptor activity 2.15452584224197 bayes_pls_golite062009
protein binding 1.87564165872234 bayes_pls_golite062009
olfactory receptor activity 1.66481660196007 bayes_pls_golite062009
cell surface binding 1.51066809142894 bayes_pls_golite062009
transporter activity 1.30184925420876 bayes_pls_golite062009
eukaryotic cell surface binding 0.89254588900557 bayes_pls_golite062009
receptor binding 0.79473181810599 bayes_pls_golite062009
pattern binding 0.619246923808839 bayes_pls_golite062009
G-protein coupled receptor activity 0.536585839391392 bayes_pls_golite062009
phospholipid binding 0.36876716174996 bayes_pls_golite062009
polysaccharide binding 0.36562246631989 bayes_pls_golite062009
complement binding 0.32786837080852 bayes_pls_golite062009
cytokine binding 0.22632966660558 bayes_pls_golite062009
immunoglobulin binding 0.210450684404 bayes_pls_golite062009
heparin binding 0.190564147009143 bayes_pls_golite062009
collagen binding 0.161881783569751 bayes_pls_golite062009
glycoprotein binding 0.0903628367778293 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.0661625326929309 bayes_pls_golite062009
pyrophosphatase activity 0.027305897174472 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0179622467180781 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0153681945260867 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [589-736]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNGYVLFHPD FRPIFQGYIL KPAYNSVDMI EVELLDDDRP ARDFNPVLMT IRDSIINQST  60
   61 GSKWMLVKNH FDEMKRVARV KRQYYWTAIK KTPFTLVISY PEQYGVSHMD IRADQEIHRI 120
  121 SIKGTNLRSV FSGKRWKIHP DWLFCKHS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 2qhkA
Description: No description for 2qhkA was found.

Predicted Domain #4
Region A:
Residues: [737-964]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTFKTPEIE LLYFLERMSE PGWRWPGSRS AMPPEHAAAM FCDRQLMQAL VFDARVTGWF  60
   61 SNNTSFNSKD DKGNEFKQRF GVTVAFLATH SGLTRWHEFH SNAAEESGVG ETFSQNNTRA 120
  121 IDEIWYKRAV DQHFVREESF VYSVPFDAGE SNSEILVTAS HAVFHNEGGK TAPAAVVGFQ 180
  181 FQHSALYKLF HNITGNACAV DDKDCYILDN NGYVIISTRV HETGRFFG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.62
Match: 2p7jA
Description: No description for 2p7jA was found.

Predicted functions:

Term Confidence Notes
signal transducer activity 3.13256594661032 bayes_pls_golite062009
molecular transducer activity 3.13256594661032 bayes_pls_golite062009
binding 1.41605711466109 bayes_pls_golite062009
protein kinase activity 1.20041834925823 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.683556549389236 bayes_pls_golite062009
protein binding 0.582195331775352 bayes_pls_golite062009
kinase activity 0.46187777247322 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.223262726188973 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [965-1218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVNGAIMKRL LEENVYRQVT VYDYQAVCFE SKNDNNASSM LLSPLFHLLR VGKWLLHTAL  60
   61 WYIVQLLQWA PGVSSHYADM YGDSNDTEPP PPEPHPDHHA RNGNGHGKKD DDHWLRYLTL 120
  121 HRTRLKPCDM KRDLYTLFNE KDNVVYNMTA HACERPFVVL PIPFSNLILL VIDQLCPRDG 180
  181 SVVLTVNPQP IDYHLSVNDS LACYKQAREF NRMRPHSCIS RHANESGIKL CGKACSVYAN 240
  241 LGLLLLCHIL SRWL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle