YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8776-PA
Organism:	Drosophila melanogaster
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8776-PA.

Description	E-value	Query Range	Subject Range
gi\|109492061 - gi\|109492061\|ref\|XP_001081563.1\| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Rattus no...	267.0	[0..42]	[281..274]
CY561_MOUSE - Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=1 SV=2	242.0	[0..44]	[281..1]
CG8776-PB, CG877... - This gene is referred to in FlyBase by the symbol Dmel\CG8776 (CG8776, FBgn0033764). It is a protein... gi\|220955244, gi... - gi\|220955244\|gb\|ACL90165.1\| CG8776-PB [synthetic construct], gi\|220945374\|gb\|ACL85230.1\| CG8776-PB [...	242.0	[0..37]	[290..14]
gi\|125809905, gi... - gi\|54636451\|gb\|EAL25854.1\| GA21312-PA [Drosophila pseudoobscura], gi\|125809905\|ref\|XP_001361276.1\| G...	240.0	[0..37]	[290..14]
gi\|55240611, gi\|... - gi\|58385667\|ref\|XP_314125.2\| ENSANGP00000023949 [Anopheles gambiae str. PEST], gi\|55240611\|gb\|EAA445...	240.0	[0..41]	[290..1]
gi\|292, gi\|89501... - pir\|\|S01167 cytochrome b561 - bovine, gi\|292\|emb\|CAA31274.1\| unnamed protein product [Bos taurus], ...	239.0	[0..28]	[282..10]
gi\|27597088, gi\|... - ref\|NP_001906.2\| cytochrome b-561 [Homo sapiens], gi\|12804235\|gb\|AAH02976.1\| Cytochrome b-561 [Homo...	238.0	[0..44]	[281..2]
CY561_PONPY - Cytochrome b561 - Pongo pygmaeus (Orangutan) CY561_PONAB - Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1	237.0	[0..44]	[281..2]
gi\|109116771 - gi\|109116771\|ref\|XP_001116102.1\| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Macaca mu...	235.0	[0..44]	[281..2]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNSVSPLP PMEEAMDRVS EKSPPGTPNG IEMPPPPDEK RYEEDPDNAW NCCSWCEYLL  60
   61 IVILSTILLV GVLVLTLFWV MFYRDGFAWS ESPKQQFNLH PILMIAGFVT LSGFSILIYR 120
  121 LCRCV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQIYVKLIHM FFHAVAIPCI ALGFISVFAS HDALHKVNFY SLHSWLGFVT MGMFVLQFVI  60
   61 GFFSFLVMLC CENKTYSCRS AMVPIHASLG LANFWLAIAT SVTGLIEKER ETVNEAGVSS 120
  121 ENKLVEHYIT SAIGVTLIFI GIIVTFAVRR SNAPASAKVY VTERI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.349353660965659	bayes_pls_golite062009
binding	0.0102629993652836	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: