| Protein: | psq-PB, psq-PC |
| Organism: | Drosophila melanogaster |
| Length: | 1064 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psq-PB, psq-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
610.0 | [0..605] | [1061..605] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MAAVRGHQYF SLRWNNYQNT MTSVFQQLRE DLSFVDVTLS CEHGSLKAHK VVLSACSTYF 60
61 QKLLLENPCK HPTIILPADI IFTDLKTIID FVYRGEIDVT ESELQGLLRT AEQLKIKGLC 120
121 ETAE
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 2nn2A |
| Description: | No description for 2nn2A was found. |
|
Region A: Residues: [125-272] |
1 11 21 31 41 51
| | | | | |
1 NADDLNDAAT ATITVSENIQ QAVVGNIVNA AIVPGAPSPS LEQQQQHHQQ QQQQQAQEQH 60
61 QQQQVHAQQQ QQQQQQINAA LLTQHGVSSG SVSLSGQLLS SSASGSSGSL AGGQQASQTP 120
121 SGLQPTPRKS RLKRSKSPDL SSGGGAGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [273-381] |
1 11 21 31 41 51
| | | | | |
1 SGGSSSGSTQ QQPQPAHHHH PQTILIQGQN PNSIVSLQQT ADGNYIPVSG SGDDSDAEDH 60
61 EHEHNHGHGH GHGGHTHGHG HSHEHSHDHE HEHKPNKICK TEHSVASPA
|
| Detection Method: | |
| Confidence: | 13.30103 |
| Match: | 2dlqA |
| Description: | No description for 2dlqA was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription activator activity | 3.52873291636993 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.53101891154822 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [382-441] |
1 11 21 31 41 51
| | | | | |
1 SNSSSASNNA AGVSGVTSTG QAIVTQIVVA RDGKDTKNMT SLGMGMNGGL LGVPMGFLDF 60
61
|
| Detection Method: | |
| Confidence: | 1.24 |
| Match: | 2qfiA |
| Description: | No description for 2qfiA was found. |
|
Region A: Residues: [442-608] |
1 11 21 31 41 51
| | | | | |
1 TPEPPAPSAT PVTVTEHVDL SCNPSTDTRD LSNTTEPLDI DNHLAQQIHR LDQSPMHSIS 60
61 HHHTGDESNS NLVQHIKSEV IEAKHLAAQH HALSQAQQQH AHHQAHQQHQ QHQQQQHQQQ 120
121 QQHLHAQQLL AQSQLQQQQQ QQQQQQQHHQ QQQQQAAAAA AAAGVHG
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription activator activity | 3.52873291636993 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.53101891154822 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [609-714] |
1 11 21 31 41 51
| | | | | |
1 QHGGHVTHAD IGGATVMEID PSQIKHEPGM IITPEIVNMM SSGHMDMYNS DTSEDSMMIA 60
61 NGSPHDQKEP HYTNLDQQHG LGGSVCGPGP GGAGGGGGMS GGAGSG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [715-833] |
1 11 21 31 41 51
| | | | | |
1 SGEKGQFNGP KAWTQDDMNS ALDALKNQNM SLTKASAIYG IPSTTLWQRA HRMGIETPKK 60
61 EGGTKSWNED ALQNALEALR SGQISANKAS KAFGIPSSTL YKIARREGIR LAAPFNAAP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [834-1064] |
1 11 21 31 41 51
| | | | | |
1 TTWTPEDLER ALEAIRAGNT SVQKASAEFG IPTGTLYGRC KREGIELSRS NPTPWSEDAM 60
61 NEALNSVRVG QMSINQAAIH YNLPYSSLYG RFKRGKYDVV ANTSGVALLN TSGNTTGSIE 120
121 IIEHSQENSL HMLQQQFPYS PSPHPPTPQH HSTPQHHSSA QQGPPTPQHM QQHVVHMQQQ 180
181 QQQQQQQSPH PGHHPQHMQQ DVVTSSSQVV HSQQQQQLQQ IYQHHGTPER S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
