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View Structure Prediction Details

Protein: CAP-PN, CAP-PE
Organism: Drosophila melanogaster
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP-PN, CAP-PE.

Description E-value Query
Range
Subject
Range
gi|25013062 - gi|25013062|gb|AAN71620.1| RH64582p [Drosophila melanogaster]
210.0 [0..1] [313..38]

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Predicted Domain #1
Region A:
Residues: [1-49]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLYHEERR RKYLQELQDM NSRRHTDNFT PSQKSPIALN RYDDFPTDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2dybA
Description: No description for 2dybA was found.

Predicted Domain #2
Region A:
Residues: [50-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLKSLVGPKT VARALFNFQG QTSKELSFRK GDTIYIRRQI DANWYEGEHN AMIGLLPASY  60
   61 VEIVSRDGAR TPSKRPSEGQ ARAKYNFQAQ SGIELSLNKG ELVTLTRRVD GNWFEGKIAN 120
  121 RKGIFPCSYV EVLTDIGAED IAARTTTVIT SQSTTNLRPN LDVLRTNINN EFNTLTQNGA 180
  181 QPPNGILKET RTLHKTDALH VDTSSEPLAY RALYKYRPQN SDELELLEGD VVHVLEKCDD 240
  241 GWFVGTSQRT GCFGTFPGNY VERA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 1griA
Description: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains; Growth factor receptor-bound protein 2 (GRB2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.13376047180398 bayes_pls_golite062009
protein binding 1.03382488697656 bayes_pls_golite062009
signal transducer activity 0.69727426993974 bayes_pls_golite062009
molecular transducer activity 0.69727426993974 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle