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View Structure Prediction Details

Protein: CG8027-PA
Organism: Drosophila melanogaster
Length: 666 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8027-PA.

Description E-value Query
Range
Subject
Range
gi|19528483 - gi|19528483|gb|AAL90356.1| RE35033p [Drosophila melanogaster]
969.0 [0..16] [666..16]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRRRWPRR MRRAMEQLRL QSRRKLLALT MTGGLCLAIW VVANYLSASE EGQTGGFSSA  60
   61 CTAIDAVYTW VNGSDPNFIE DIRRFDDKYD PSRFDDKNEL RYSLRSLEKH AAWIRHVYIV 120
  121 TNGQIPSWLD LSYERVTVVP HEVLAPDPDQ LPTFSSSAIE TFLHRIPKLS KRFLYLNDDI 180
  181 FLGAPLYPED LYTEAEGVRV YQAWMVPG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CALDCPWTYI GDGACDRHCN IDACQFDGGD CSETGPASDA HVIPPSKEVL EVQPAAVPQS  60
   61 RVHRFPQMGL QKLFRRSSAN FKDVMRHRNV STLKELRRIV ERF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKAKLMSLNP ELETSSSEPQ TTQRHGLRKE DFKSSTDIYS HSLIATNMLL NRAYGFKARH  60
   61 VLAHV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [377-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFLIDKDIVE AMQRRFHQQI LDTAHQRFRA PTDLQYAFAY YSFLMSETKV MSVEEIFDEF  60
   61 DTDGSATWSD REVRTFLTRI YQPPLDWSAM RYFEEVVQNC TRNLGMHLKV DTVEHSTLVY 120
  121 ERYEDSNLPT ITRDLVVRCP LLAEALAANF AVRPKYNFHV SPKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [541-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSHSNFMMLT SNLTEVVESL DRLRRNPRKF NCINDNLDAN RGEDNEMVRH LLEDFYLSFF  60
   61 PRRSKFELPP QYRNRFESWR DFQRWKRRKR AVLVIGYGVS LLLVVCLLRF MCHHKAKLVR 120
  121 RCVQRL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle