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View Structure Prediction Details

Protein: CG8027-PA
Organism: Drosophila melanogaster
Length: 666 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8027-PA.

Description E-value Query
Range
Subject
Range
gi|19528483 - gi|19528483|gb|AAL90356.1| RE35033p [Drosophila melanogaster]
969.0 [0..16] [666..16]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRRRWPRR MRRAMEQLRL QSRRKLLALT MTGGLCLAIW VVANYLSASE EGQTGGFSSA  60
   61 CTAIDAVYTW VNGSDPNFIE DIRRFDDKYD PSRFDDKNEL RYSLRSLEKH AAWIRHVYIV 120
  121 TNGQIPSWLD LSYERVTVVP HEVLAPDPDQ LPTFSSSAIE TFLHRIPKLS KRFLYLNDDI 180
  181 FLGAPLYPED LYTEAEGVRV YQAWMVPG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CALDCPWTYI GDGACDRHCN IDACQFDGGD CSETGPASDA HVIPPSKEVL EVQPAAVPQS  60
   61 RVHRFPQMGL QKLFRRSSAN FKDVMRHRNV STLKELRRIV ERF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKAKLMSLNP ELETSSSEPQ TTQRHGLRKE DFKSSTDIYS HSLIATNMLL NRAYGFKARH  60
   61 VLAHV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [377-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFLIDKDIVE AMQRRFHQQI LDTAHQRFRA PTDLQYAFAY YSFLMSETKV MSVEEIFDEF  60
   61 DTDGSATWSD REVRTFLTRI YQPPLDWSAM RYFEEVVQNC TRNLGMHLKV DTVEHSTLVY 120
  121 ERYEDSNLPT ITRDLVVRCP LLAEALAANF AVRPKYNFHV SPKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [541-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSHSNFMMLT SNLTEVVESL DRLRRNPRKF NCINDNLDAN RGEDNEMVRH LLEDFYLSFF  60
   61 PRRSKFELPP QYRNRFESWR DFQRWKRRKR AVLVIGYGVS LLLVVCLLRF MCHHKAKLVR 120
  121 RCVQRL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle