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View Structure Prediction Details

Protein: didum-PA
Organism: Drosophila melanogaster
Length: 1792 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for didum-PA.

Description E-value Query
Range
Subject
Range
MYO5A_RAT - Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1
935.0 [0..3] [1792..2]

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Predicted Domain #1
Region A:
Residues: [1-1081]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEEMLYAQ GAKIWVPHAD LVWESATLEE SYRKGAGFLK ICTDSGKLKE VKLKADGSDL  60
   61 PPLRNPAILV GQNDLTTLSY LHEPGVLHNL RVRFCERQII YTYCGIILVA INPYAEMPLY 120
  121 GPSIIRAYRG HAMGDLEPHI FALAEEAYTK LERENCNLSI IVSGESGAGK TVSAKYAMRY 180
  181 FAAVGGSESE TQVERKVLAS SPIMEAFGNA KTTRNDNSSR FGKFTKLLFR NQMGVMFLQG 240
  241 ATMHTYLLEK SRVVYQAQGE RNYHIFYQLC AARSKYPELV LDHQDKFQFL NMGGAPEIER 300
  301 VSDAEQFNET VQAMTVLGFS IQQIADIVKI LAGILHLGNI QVSKKFNEGS EEEDSDSCDI 360
  361 FHNDIHLQIT ADLLRVSADD LRRWLLMRKI ESVNEYVLIP NSIEAAQAAR DALAKHIYAK 420
  421 LFQYIVGVLN KSLNNGSKQC SFIGVLDIYG FETFEVNSFE QFCINYANEK LQQQFNQHVF 480
  481 KLEQEEYLKE GITWTMIDFY DNQPCIDLIE SRLGVLDLLD EECRMPKGSD ESWAGKLIGK 540
  541 CNKFPHFEKP RFGTTSFFIK HFSDTVEYDV NGFLEKNRDT VSKELTQVLS ESNMSLAKQV 600
  601 MTLEEIDTLC VDSAKSSTLG GRVVISAGRK QVVPSKQHRK TVGSQFQESL ASLISTLHAT 660
  661 TPHYVRCIKP NDDKVAFKWE TAKIIQQLRA CGVLETVRIS AAGFPSRWLY PDFYMRYQLL 720
  721 VYRSKLDKND MKLSCRNIVM KWIQDEDKYR FGNTQIFFRA GQVAFLEQVR ANLRKKYITI 780
  781 VQSVVRRFVY RRQFLRIQKV INGIQKHARG YLARERTQKM REARAGLILS KYARGWLCRR 840
  841 RYLRLRHSIS GIQTYARGML ARNKFHAMRD HYRAVQIQRF VRGALARRAY QKRRRNIIIC 900
  901 QAAIRRFLAR RKFKRMKAEA KTISHMENKY MGLENKIISM QQRIDELNRD NSNLKHKTSE 960
  961 ISVLKMKLEL KKTLEAEFKN VKAACQDKDK LIEALNKQLE AERDEKMQLL EENGHAQEEW1020
 1021 ISQKQTWRQE NEELRRQIDE IIDMAKNAEV NQRNQEDRML AEIDNRELNE AYQRAIKDKE1080
 1081 V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [1082-1157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IENENFMLKE ELSRLTAGSF SLHARKASNA SSQNEDDVGY ASAKNTLDIN RPPDLLSKNY  60
   61 SYNDSTSLVV KLRSIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1158-1206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEEKQKHKVL QEQYIKLSSR HKPTEDSFRV SELEVENEKL RSEYDQLRT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 1wt6A
Description: Coiled-Coil domain of DMPK
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [1207-1403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIKHGVEINE LNAQHAALQE EVRRRREECI QLKAVLLQQS QSMRSLEPES LQMRGNDVNE  60
   61 LMEAFHSQKL INRQLESELK AITEEHNSKL VEMTQEIERL NNEKDELQKV MFESIDEFED 120
  121 SNVDTLRQND RYLRRELQKA VAQFLLVQEE LKLANAKLKA YRQDGGQLEH KIEEEMIRNK 180
  181 SNGTSADVGA NVTKQKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.30103
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #5
Region A:
Residues: [1404-1792]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNPQGLMKFH SSDLDKILQR LLSALTPRTV VGLLPGFPAY LIFMCIRYTD LTNADDDVRE  60
   61 LLSKFVIQIK KMHRTPHPIE NRVIWLVNSI TLLNLMKQYG DVDEYVKFNT EKQNQQQLKN 120
  121 FNLFEYRRVI LDLIVNLYQA LIMQIQGLLD PKIVPAILNN DEIQRGRQAH GMRSRATSIG 180
  181 ASSSPEHGGG PAWKQLIGQL EHFYKQFQHF GLDNCYAEQI FHQLLYFICA VALNCLMLRG 240
  241 DICMWETGMI IRYNIGCIED WVRSKKMSND VLTALAPLNQ VSQLLQSRKS EQDVQTICDL 300
  301 CTSLSTAQVL KVMKSYKLDD YESEITNVFL EKLTEKLNAR QMQKSNSDEF TIDQKFIQPF 360
  361 KVVFRYSDIK LEDIELPSHL NLDEFLTKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 2f6hX
Description: Myosin V cargo binding domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle