YRC Public Data Repository - Protein Structure Prediction

Protein:	gus-PF
Organism:	Drosophila melanogaster
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gus-PF.

Description	E-value	Query Range	Subject Range
gus-PB, gus-PC - The gene gustavus is referred to in FlyBase by the symbol Dmel\gus (CG2944, FBgn0026238). It is a pr...	263.0	[0..1]	[281..63]
gi\|108872651, gi... - gi\|157128193\|ref\|XP_001655084.1\| hypothetical protein AaeL_AAEL011069 [Aedes aegypti], gi\|157128191\|...	260.0	[0..1]	[281..75]
gi\|58392451, gi\|... - gi\|58392451\|ref\|XP_319376.2\| ENSANGP00000012204 [Anopheles gambiae str. PEST], gi\|55236407\|gb\|EAA137...	256.0	[0..1]	[281..1]
gi\|91088725 - gi\|91088725\|ref\|XP_975181.1\| PREDICTED: similar to CG2944-PA, isoform A [Tribolium castaneum]	249.0	[0..1]	[281..275]
gi\|147907322, gi... - gi\|28175684\|gb\|AAH45223.1\| Ns:zf-e326 protein [Xenopus laevis], gi\|147907322\|ref\|NP_001080202.1\| ns:...	240.0	[0..3]	[277..1]
gi\|73956871 - gi\|73956871\|ref\|XP_536736.2\| PREDICTED: similar to SPRY domain-containing SOCS box protein SSB-1 [Ca...	239.0	[0..2]	[278..162]

Back

Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMGQKISGG VKTVSRNDSQ STFKPIIPRE LQADFVKPAR IDILLDMPPA SRDLQLKHSW  60
   61 NSEDRSLNIF VKEDDKLTFH RHPVAQSTDC IRGKVGLTKG LHIWEIYWPT RQRGTHAVVG 120
  121 VCTADAPLHS VGYQSLVGST EQSWGWDLGR NKLYHDSKNC AGVTYPAILK NDEAFLVPDK 180
  181 FLVALDMDEG TLSFIVDQQY LGIAFRGLRG KKLYPIVSAV WGHCEITMRY IGGLDPEPLP 240
  241 LMDLCRRTIR QKIGRTNLEE HIQQLQLPLS MKTYLLYKNR R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	2fnjA
Description:	No description for 2fnjA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.35172572100661	bayes_pls_golite062009
protein binding	0.524849326544427	bayes_pls_golite062009
carbohydrate binding	0.456644264180763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: