YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0307141, CG1...
Organism:	Drosophila melanogaster
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307141, CG1....

Description	E-value	Query Range	Subject Range
gi\|148229628, gi... - gi\|37589390\|gb\|AAH59335.1\| MGC69086 protein [Xenopus laevis], gi\|148229628\|ref\|NP_001080028.1\| low m...	207.0	[0..2]	[200..67]
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	206.0	[0..2]	[200..73]
gi\|109070671 - gi\|109070671\|ref\|XP_001115562.1\| PREDICTED: similar to proteasome beta 8 subunit isoform E2 proprote...	206.0	[0..2]	[200..73]
PSB_METKA - Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) G...	205.0	[0..2]	[201..11]
gi\|49077212, gi\|... - gi\|71021599\|ref\|XP_761030.1\| hypothetical protein UM04883.1 [Ustilago maydis 521], ref\|XP_402498.1\| ...	205.0	[0..2]	[199..28]
gi\|18157533 - gi\|18157533\|dbj\|BAB83848.1\| PSMB8-A [Oryzias latipes]	204.0	[0..2]	[200..72]
PSB8_RAT - Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3	204.0	[0..2]	[200..73]
PSB5_SPIOL - Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1	203.0	[0..2]	[199..56]
gi\|1405323 - gi\|1405323\|dbj\|BAA10932.1\| LMPX of lamprey [Petromyzon marinus]	203.0	[0..2]	[199..71]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLLGIKGP DFVMLAADTT HARSIIVMKE DQNKIHKVSD SLLISTVGES GDTEQFTEFI  60
   61 SKNIALYKMR NGYDLSPRES AHFTRKNLAE YLRSRTPYQV FMFVAGYDPN AGPELTFIDY 120
  121 LANALPVNYA GHGYGAIFAS SIYDRYWHPN ITQAEAYDVF KKCIAEIQKR LVVNLKNFTV 180
  181 AVVDKDGVRD LEPISAASLA A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1iruK
Description:	Proteasome beta subunit (catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
endopeptidase activity	6.91642761177919	bayes_pls_golite062009
peptidase activity	6.84511694091156	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	6.5973571808298	bayes_pls_golite062009
hydrolase activity	4.47652590304822	bayes_pls_golite062009
threonine-type endopeptidase activity	2.98214579292788	bayes_pls_golite062009
threonine-type peptidase activity	2.98214579292788	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	1.18139971903068	bayes_pls_golite062009
nucleic acid binding	0.448212653390607	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: