YRC Public Data Repository - Protein Structure Prediction

Protein:	baf-PA, FBpp0305308
Organism:	Drosophila melanogaster
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for baf-PA, FBpp0305308.

Description	E-value	Query Range	Subject Range
gi\|3002951 - gi\|3002951\|gb\|AAC08964.1\| breakpoint cluster region protein 1 [Homo sapiens]	166.0	[0..4]	[87..3]
BAF_RAT - Barrier-to-autointegration factor OS=Rattus norvegicus GN=Banf1 PE=1 SV=1	164.0	[0..4]	[90..3]
gi\|51858787 - gb\|AAH82151.1\| MGC98417 protein [Xenopus laevis] BAF_MOUSE - Barrier-to-autointegration factor OS=Mus musculus GN=Banf1 PE=1 SV=1	164.0	[0..4]	[90..3]
BAFA_XENLA - Barrier-to-autointegration factor A OS=Xenopus laevis GN=banf1-a PE=1 SV=1	164.0	[0..1]	[90..1]
AGAP008753-PA - Barrier-to-autointegration factor B\|protein_coding\|3R:17093063:17093335:1\|gene:AGAP008753 gi\|21298149, gi\|... - gi\|31211799\|ref\|XP_314872.1\| AGAP008753-PA [Anopheles gambiae str. PEST], gi\|21298149\|gb\|EAA10294.1\|...	163.0	[0..1]	[90..1]
gi\|195472887, gi... - gi\|38048407\|gb\|AAR10106.1\| similar to Drosophila melanogaster CG7380 [Drosophila yakuba], gi\|1954728...	163.0	[0..1]	[90..1]
BAF_DANRE - Barrier-to-autointegration factor OS=Danio rerio GN=banf1 PE=1 SV=1	163.0	[0..1]	[90..1]
gi\|108875292, gi... - gi\|94468590\|gb\|ABF18144.1\| DNA-bridging protein BAF [Aedes aegypti], gi\|157119560\|ref\|XP_001659424.1...	161.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTSQKHRN FVAEPMGNKS VTELAGIGET LGGRLKDAGF DMAYTVLGQY LVLKKDEELF  60
   61 KDWMKEVCHA SSKQASDCYN CLNDWCEEFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1ci4A
Description:	Barrier-to-autointegration factor, BAF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.04668306874326	bayes_pls_golite062009
DNA binding	1.71225698697944	bayes_pls_golite062009
nucleic acid binding	1.68436311270395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: