YRC Public Data Repository - Protein Structure Prediction

Protein:	cl-PA, FBpp03030...
Organism:	Drosophila melanogaster
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cl-PA, FBpp03030....

Description	E-value	Query Range	Subject Range
gi\|125987423\|ref... - GA10712-PA [Drosophila pseudoobscura], GA10712 [Drosophila pseudoobscura pseudoobscura] gi\|54645806, gi\|... - gi\|54645806\|gb\|EAL34544.1\| GA10712 [Drosophila pseudoobscura pseudoobscura], gi\|125987423\|ref\|XP_001...	155.0	[0..1]	[126..1]
gi\|58383902, gi\|... - gi\|58383902\|ref\|XP_312874.2\| glutaredoxin (AGAP003178-PA) [Anopheles gambiae str. PEST], gi\|55241551... AGAP003178-PA - GRX2: glutaredoxin\|protein_coding\|2R:33578378:33578915:-1\|gene:AGAP003178	154.0	[0..1]	[126..1]
gi\|94469064, gi\|... - gi\|94469064\|gb\|ABF18381.1\| thioredoxin [Aedes aegypti], gi\|157131856\|ref\|XP_001662342.1\| glutaredoxi...	146.0	[0..1]	[126..1]
FBpp0310197, CG3... - This gene is referred to in FlyBase by the symbol Dmel\CG3939 (CG3939, FBgn0040396). It is a protein... gi\|220958336, gi... - gi\|220958336\|gb\|ACL91711.1\| CG3939-PA [synthetic construct], gi\|220949190\|gb\|ACL87138.1\| CG3939-PA [...	134.0	[0..7]	[126..7]
gi\|38048627 - gi\|38048627\|gb\|AAR10216.1\| similar to Drosophila melanogaster CG11024 [Drosophila yakuba]	133.0	[0..1]	[102..1]
gi\|63029279 - gi\|63029279\|gb\|AAY27537.1\| CG3939 [Drosophila simulans]	128.0	[0..7]	[126..7]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVTHNVKGY DEFTKKMEEL ENGDEPVHVL FSGGKDEKGE SWCPYCVKAE PVIHDALKKA  60
   61 PGNSHFVHVD VGERAYWKDL NCPFRKDPNT HLIFLPTLLR WKRPQRLDGE RCSNQDLVEM 120
  121 MFEDED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1wouA
Description:	Crystal Structure of human Trp14
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.672192331361968	bayes_pls_golite062009
binding	0.618139748326926	bayes_pls_golite062009
protein-disulfide reductase activity	0.570446901634881	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: