YRC Public Data Repository - Protein Structure Prediction

Protein:	Taf10-PA
Organism:	Drosophila melanogaster
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Taf10-PA.

Description	E-value	Query Range	Subject Range
gi\|44985712, gi\|... - gi\|45200942\|ref\|NP_986512.1\| AGL155Wp [Ashbya gossypii ATCC 10895], gi\|44985712\|gb\|AAS54336.1\| AGL15... gi\|44985712 - gi\|44985712\|gb\|AAS54336.1\| AGL155Wp [Ashbya gossypii ATCC 10895]	200.0	[0..6]	[166..10]
TAF10_SCHPO - Transcription initiation factor TFIID subunit 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... taf10 - transcription factor TFIID complex subunit Taf10	185.0	[0..15]	[166..50]
gi\|109107478 - gi\|109107478\|ref\|XP_001109152.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit...	184.0	[0..12]	[166..123]
gi\|76635972, gi\|... - gi\|76635972\|ref\|XP_884376.1\| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...	183.0	[0..34]	[166..100]
gi\|73988324 - gi\|73988324\|ref\|XP_863143.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 10 ...	181.0	[0..34]	[166..9]
gi\|61363275, gi\|... - gi\|61363578\|gb\|AAX42413.1\| TAF10 RNA polymerase II TATA box binding protein-associated factor [synth... TAF10 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa	181.0	[0..34]	[166..100]
taf-10 - status:Confirmed UniProt:Q95ZS0 protein_id:AAK82906.1	180.0	[0..13]	[165..33]
gi\|26338586 - gi\|26338586\|dbj\|BAC32964.1\| unnamed protein product [Mus musculus]	180.0	[0..34]	[166..100]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDGEDISV TPAESVTSAT DTEEEDIDSP LMQSELHSDE EQPDVEEVPL TTEESEMDEL  60
   61 IKQLEDYSPT IPDALTMHIL KTAGFCTVDP KIVRLVSVSA QKFISDIAND ALQHCKTRTT 120
  121 NIQHSSGHSS SKDKKNPKDR KYTLAMEDLV PALADHGITM RKPQYFV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	1f1eA
Description:	Archaeal histone
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	8.88482968293417	bayes_pls_golite062009
DNA binding	4.00167809338753	bayes_pls_golite062009
transcription regulator activity	3.91807454227165	bayes_pls_golite062009
transcription initiation factor activity	3.78067108255869	bayes_pls_golite062009
nucleic acid binding	3.72299085850948	bayes_pls_golite062009
binding	3.67149228723241	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.02428691626433	bayes_pls_golite062009
transcription factor activity	2.18855864512878	bayes_pls_golite062009
histone acetyltransferase activity	1.68039710552195	bayes_pls_golite062009
lysine N-acetyltransferase activity	1.68039710552195	bayes_pls_golite062009
protein binding	1.22636497573761	bayes_pls_golite062009
transcription activator activity	1.12739348005764	bayes_pls_golite062009
nucleotidyltransferase activity	1.03060091158028	bayes_pls_golite062009
transcription factor binding	1.01773884290535	bayes_pls_golite062009
transcription coactivator activity	0.976797801726735	bayes_pls_golite062009
transcription cofactor activity	0.840442755533537	bayes_pls_golite062009
transcription repressor activity	0.621482805601238	bayes_pls_golite062009
N-acetyltransferase activity	0.414837946476318	bayes_pls_golite062009
acyltransferase activity	0.133449022804582	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.131532799941764	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0919482386963733	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: