YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL48-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL48-PA, FBpp0....

Description	E-value	Query Range	Subject Range
RR10_ARATH - 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1	155.0	[0..5]	[145..30]
gi\|54644874, gi\|... - gi\|54644874\|gb\|EAL33614.1\| GA14592-PA [Drosophila pseudoobscura], gi\|125985573\|ref\|XP_001356550.1\| G...	153.0	[0..5]	[180..1]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	151.0	[0..41]	[145..38]
RT10_PONPY - Mitochondrial 28S ribosomal protein S10 - Pongo pygmaeus (Orangutan) RT10_PONAB - 28S ribosomal protein S10, mitochondrial OS=Pongo abelii GN=MRPS10 PE=2 SV=1	149.0	[0..9]	[171..48]
MRPS10 - mitochondrial ribosomal protein S10	149.0	[0..9]	[171..48]
gi\|55626620 - gi\|55626620\|ref\|XP_518474.1\| PREDICTED: mitochondrial ribosomal protein S10 isoform 2 [Pan troglodyt...	149.0	[0..9]	[171..48]
gi\|109071160, gi... - gi\|109102968\|ref\|XP_001114991.1\| PREDICTED: similar to mitochondrial ribosomal protein S10 [Macaca m... gi\|90075826 - gi\|90075826\|dbj\|BAE87593.1\| unnamed protein product [Macaca fascicularis]	149.0	[0..9]	[171..48]
gi\|158285553, gi... - gi\|58378294\|ref\|XP_308368.2\| ENSANGP00000019825 [Anopheles gambiae str. PEST], gi\|55245413\|gb\|EAA045... AGAP007507-PA - Mitochondrial ribosomal protein L48\|protein_coding\|2L:46994915:46996546:1\|gene:AGAP007507	147.0	[0..17]	[179..22]
gi\|63146275 - gi\|63146275\|gb\|AAH96043.1\| Mrps10 protein [Mus musculus]	146.0	[0..6]	[171..36]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRILPSVR LALQVPKATT TAVRSTSGSV YEPDYLESLK PKFPQYESLN VQIKGYDYPQ  60
   61 LESYQRFLHG LAEYLDLDVS DCYALPPQKT TVQRLRPNST VIESEYKLTT YERNLQLNNV 120
  121 DAPVYPQFLR LAQAALPEGV SLQVQEYTDD CEERRYVPDK ELLDLKDELE RMGGPTTTRK 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.43894893974659	bayes_pls_golite062009
structural molecule activity	6.16192441640189	bayes_pls_golite062009
binding	0.034437384836753	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: