YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11454-PA
Organism:	Drosophila melanogaster
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11454-PA.

Description	E-value	Query Range	Subject Range
gi\|13430610 - gi\|13430610\|gb\|AAK25927.1\|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]	174.0	[0..2]	[237..240]
gi\|76689273 - gi\|76689273\|ref\|XP_881129.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	174.0	[0..3]	[231..216]
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1	174.0	[0..2]	[235..234]
PABPC4 - poly(A) binding protein, cytoplasmic 4 (inducible form)	173.0	[0..2]	[234..206]
gi\|55959639, gi\|... - gi\|66267552\|gb\|AAH94755.1\| PABPC4 protein [Homo sapiens], gi\|55962217\|emb\|CAI12298.1\| poly(A) bindin... gi\|114555673 - gi\|114555673\|ref\|XP_001170937.1\| PREDICTED: poly A binding protein, cytoplasmic 4 isoform 1 [Pan tro...	173.0	[0..2]	[234..206]
gi\|109002439 - gi\|109002439\|ref\|XP_001113342.1\| PREDICTED: poly A binding protein, cytoplasmic 4 [Macaca mulatta] CCDS438.1_1 - null	173.0	[0..2]	[234..206]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQLLMQQM YSGASVMTIS ETNIDGYRYG IPSGQHQEQP IYPFLPNENG DQLVGQLEDD  60
   61 DDEEEDEEQR TLFCGNLDER VTEEILYEVF LQAGPIEGVR IPTDNNGRPR NFGFVTYQRL 120
  121 CAVPFALDLY QGLELFQKKV TIKQQGGKQL PAYNQSRLRN QFMMEALPQP SPLRHARHSL 180
  181 HNGKPYDRNP FGHNADQRRR SDSSVMERNR LKPQQHHQHM QGGSRRSDQR SNNKRRLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	3sxlA
Description:	Sex-lethal protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: