YRC Public Data Repository - Protein Structure Prediction

Protein:	H2A4_RAT
Organism:	Rattus norvegicus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2A4_RAT.

Description	E-value	Query Range	Subject Range
gi\|68432331 - gi\|68432331\|ref\|XP_690287.1\| PREDICTED: similar to ReO_6 [Danio rerio]	184.0	[0..1]	[127..288]
gi\|50728596 - gi\|50728596\|ref\|XP_416195.1\| PREDICTED: similar to histone 2, H2ac [Gallus gallus]	176.0	[0..1]	[129..222]
gi\|74004252 - gi\|74004252\|ref\|XP_545426.2\| PREDICTED: similar to Histone H2A.l (H2A/l) [Canis familiaris]	171.0	[0..1]	[123..50]
gi\|76612869 - gi\|76612869\|ref\|XP_871733.1\| PREDICTED: similar to histone H2A [Bos taurus]	168.0	[0..1]	[130..61]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRAKQGGK ARAKAKSRSF RAGLQFPVGR VHRLLRQGNY AERIGAGTPV YLAAVLEYLT  60
   61 AEILELAGNA ARDNKKTRII PRHLQLAIRN DEELNKLLGR VTIAQGGVLP NIQAVLLPKK 120
  121 TESHHKSQTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	2f8nK
Description:	No description for 2f8nK was found.

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: