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View Structure Prediction Details

Protein: FABPH_RAT
Organism: Rattus norvegicus
Length: 133 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABPH_RAT.

Description E-value Query
Range		 Subject
Range
gi|114589486 - gi|114589486|ref|XP_001158395.1| PREDICTED: similar to Retinol-binding protein I, cellular (Cellular...
 178.0 [0..1] [131..63]
gi|226536920, gi... - gi|39939390|gb|AAR32738.1| fatty acid-binding protein [Capra hircus], gi|226536920|gb|ACO72586.1| he...
 175.0 [0..1] [133..1]
FABPH_ICTTR - Fatty acid-binding protein, heart OS=Ictidomys tridecemlineatus GN=FABP3 PE=2 SV=3
 174.0 [0..1] [133..1]
FABPH_PIG - Fatty acid-binding protein, heart OS=Sus scrofa GN=FABP3 PE=2 SV=3
 174.0 [0..1] [133..1]
gi|57043188 - gi|57043188|ref|XP_535331.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP) (Heart...
 173.0 [0..1] [133..1]
gi|60653429, gi|... - gi|60653429|gb|AAX29409.1| fatty acid binding protein 3 muscle and heart [synthetic construct], gi|3...
 173.0 [0..1] [133..1]
FABP7_CHICK - Fatty acid-binding protein, brain OS=Gallus gallus GN=FABP7 PE=2 SV=2
 173.0 [0..1] [131..1]
gi|51267 - gi|51267|emb|CAA33084.1| unnamed protein product [Mus musculus]
 172.0 [0..1] [133..1]
gi|60656463, gi|... - gi|60656465|gb|AAX32796.1| fatty acid binding protein 3 [synthetic construct], gi|60656463|gb|AAX327...
FABP3 - fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
gi|55586683 - gi|55586683|ref|XP_513267.1| PREDICTED: fatty acid binding protein 3 [Pan troglodytes]
 172.0 [0..1] [133..1]

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Predicted Domain #1
Region A:
Residues: [1-133] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAFVGTWK LVDSKNFDDY MKSLGVGFAT RQVASMTKPT TIIEKNGDTI TIKTHSTFKN  60
   61 TEISFQLGVE FDEVTADDRK VKSVVTLDGG KLVHVQKWDG QETTLTRELS DGKLILTLTH 120
  121 GNVVSTRTYE KEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.69897
Match: 1g5wA
Description: Muscle fatty acid binding protein (m-fabp)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
long-chain fatty acid transporter activity 5.31242454679135 bayes_pls_golite062009
fatty acid transporter activity 5.05947161650978 bayes_pls_golite062009
lipid transporter activity 4.30505384117861 bayes_pls_golite062009
retinoid binding 3.86745158299736 bayes_pls_golite062009
isoprenoid binding 3.80802424204178 bayes_pls_golite062009
lysophospholipid transporter activity 3.53484598441971 bayes_pls_golite062009
retinol binding 3.41359399354212 bayes_pls_golite062009
binding 2.93830472620404 bayes_pls_golite062009
transcription regulator activity 2.27413749831465 bayes_pls_golite062009
transporter activity 2.15627660314839 bayes_pls_golite062009
transcription repressor activity 1.45696778890481 bayes_pls_golite062009
protein binding 1.23450129884619 bayes_pls_golite062009
prostaglandin-D synthase activity 1.18764036773412 bayes_pls_golite062009
lipid binding 1.0002255159651 bayes_pls_golite062009
retinol transporter activity 0.811095267558536 bayes_pls_golite062009
fatty acid binding 0.761923641769607 bayes_pls_golite062009
substrate-specific transporter activity 0.670647472301401 bayes_pls_golite062009
retinoic acid binding 0.539496110498594 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.50851501669551 bayes_pls_golite062009
bile acid binding 0.37501307074598 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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