YRC Public Data Repository - Protein Structure Prediction

Protein:	BAF_RAT
Organism:	Rattus norvegicus
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAF_RAT.

Description	E-value	Query Range	Subject Range
gi\|3002951 - gi\|3002951\|gb\|AAC08964.1\| breakpoint cluster region protein 1 [Homo sapiens]	183.0	[0..1]	[86..1]
gi\|51858787 - gb\|AAH82151.1\| MGC98417 protein [Xenopus laevis] BAF_MOUSE - Barrier-to-autointegration factor OS=Mus musculus GN=Banf1 PE=1 SV=1	181.0	[0..1]	[89..1]
gi\|55618455, gi\|... - gi\|55618455\|ref\|XP_526054.1\| PREDICTED: similar to barrier to autointegration factor 1 [Pan troglody...	177.0	[0..1]	[89..1]
gi\|47219416, gi\|... - gi\|47219416\|emb\|CAG01579.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47201952\|emb\|CAF876...	172.0	[0..2]	[89..3]
AGAP008753-PA - Barrier-to-autointegration factor B\|protein_coding\|3R:17093063:17093335:1\|gene:AGAP008753 gi\|21298149, gi\|... - gi\|31211799\|ref\|XP_314872.1\| AGAP008753-PA [Anopheles gambiae str. PEST], gi\|21298149\|gb\|EAA10294.1\|...	172.0	[0..2]	[89..3]
BAF_DANRE - Barrier-to-autointegration factor OS=Danio rerio GN=banf1 PE=1 SV=1	172.0	[0..2]	[89..3]
BAFA_XENLA - Barrier-to-autointegration factor A OS=Xenopus laevis GN=banf1-a PE=1 SV=1	170.0	[0..2]	[89..3]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSQKHRDF VAEPMGEKPV GSLAGIGDAL GKRLEERGFD KAYVVLGQFL VLKKDEDLFR  60
   61 EWLKDTCGAN AKQSRDCFGC LREWCDAFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1ci4A
Description:	Barrier-to-autointegration factor, BAF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.04668306874326	bayes_pls_golite062009
DNA binding	1.71225698697944	bayes_pls_golite062009
nucleic acid binding	1.68436311270395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: