YRC Public Data Repository - Protein Structure Prediction

Protein:	RS4X_RAT
Organism:	Rattus norvegicus
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS4X_RAT.

Description	E-value	Query Range	Subject Range
RS4_CHICK - 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2	506.0	[0..1]	[263..1]
gi\|12851918 - gi\|12851918\|dbj\|BAB29207.1\| unnamed protein product [Mus musculus]	506.0	[0..1]	[263..1]
gi\|57090063 - gi\|57090063\|ref\|XP_537399.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Canis famili...	506.0	[0..1]	[263..1]
gi\|62896517 - gi\|62896517\|dbj\|BAD96199.1\| ribosomal protein S4, X-linked X isoform variant [Homo sapiens]	506.0	[0..1]	[263..1]
RS4_CRIGR - 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2	506.0	[0..1]	[263..1]
RS4_XENTR - 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3	505.0	[0..1]	[263..1]
gi\|227229 - gi\|227229\|prf\|\|1617101C ribosomal protein S4	504.0	[0..1]	[263..1]
RS4Y1_MONDO - 40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3	504.0	[0..1]	[263..1]
gi\|126722859, gi... - gi\|61835740\|ref\|XP_591678.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Bos taurus],...	504.0	[0..1]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPKKHLK RVAAPKHWML DKLTGVFAPR PSTGPHKLRE CLPLIIFLRN RLKYALTGDE  60
   61 VKKICMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFIKIDGKVR TDITYPAGFM DVISIDKTGE NFRLIYDTKG RFAVHRITPE EAKYKLCKVR  60
   61 KIFVGTKGIP HLVTHDARTI RYPDPLIKVN DTIQIDLETG KITDFIKFDT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.920819
Match:	PF00900.11
Description:	No description for PF00900.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.809	N/A	N/A	b.64.1	Mannose 6-phosphate receptor domain

Predicted Domain #3

Region A:
Residues: [178-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNLCMVTGGA NLGRIGVITN RERHPGSFDV VHVKDANGNS FATRLSNIFV IGKGNKPWIS  60
   61 LPRGKGIRLT IAEERDKRLA AKQSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits