YRC Public Data Repository - Protein Structure Prediction

Protein:	GBG11_RAT
Organism:	Rattus norvegicus
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBG11_RAT.

Description	E-value	Query Range	Subject Range
gi\|109067491, gi... - gi\|109067491\|ref\|XP_001098610.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein...	7.0E-22	[1..73]	[1..74]
GBG1_BOVIN - Guanine nucleotide-binding protein G(T) subunit gamma-T1 OS=Bos taurus GN=GNGT1 PE=1 SV=2	2.0E-21	[1..73]	[1..74]
GBG7_MOUSE - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Mus musculus GN=Gng7 PE=1 SV=2 gi\|117616394 - gi\|117616394\|gb\|ABK42215.1\| G protein gamma 7 [synthetic construct]	2.0E-21	[11..72]	[6..67]
gi\|149705481 - gi\|149705481\|ref\|XP_001492841.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... CCDS5633.1_1 - null GBG1_CANLF - Guanine nucleotide-binding protein G(T) subunit gamma-T1 OS=Canis lupus familiaris GN=GNGT1 PE=2 SV=... GNGT1 - guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 tr\|M3WUX9\|M3WUX9... - Guanine nucleotide-binding protein subunit gamma OS=Felis catus GN=GNGT1 PE=3 SV=1 gi\|114614532, gi... - gi\|114614534\|ref\|XP_001168330.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma tr... gi\|123983850, gi... - gi\|123998199\|gb\|ABM86701.1\| guanine nucleotide binding protein (G protein), gamma transducing activi...	2.0E-21	[1..73]	[1..74]
GBG7_RAT - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Rattus norvegicus GN=Gng7 PE=2 ...	4.0E-21	[11..72]	[6..67]
gi\|62858615, gi\|... - gi\|89273841\|emb\|CAJ81829.1\| guanine nucleotide binding protein (G protein), gamma 7 [Xenopus tropica...	5.0E-21	[11..72]	[6..67]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALHIEDLP EKEKLKMEVE QLRKEVKLQR QQVSKCSEEI KNYIEERSGE DPLVKGIPED  60
   61 KNPFKEKGSC VIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1xhmB
Description:	The Crystal Structure of a Biologically Active Peptide (SIGK) Bound to a G Protein Beta:Gamma Heterodimer
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
GTPase activity	5.98519752009234	bayes_pls_golite062009
angiotensin receptor binding	2.59868793911346	bayes_pls_golite062009
type 1 angiotensin receptor binding	2.59868793911346	bayes_pls_golite062009
signal transducer activity	1.75801578312445	bayes_pls_golite062009
molecular transducer activity	1.75801578312445	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.62723010313037	bayes_pls_golite062009
pyrophosphatase activity	1.55645551527959	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.53805916057226	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.53586893403838	bayes_pls_golite062009
receptor binding	1.45302453757621	bayes_pls_golite062009
binding	1.25375089530994	bayes_pls_golite062009
hydrolase activity	0.489687420983837	bayes_pls_golite062009
protein binding	0.399162858691971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: