YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254829844, gi...
Organism:	Listeria monocytogenes 10403S
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254829844, gi....

Description	E-value	Query Range	Subject Range
CINA_THETN - Putative competence-damage inducible protein OS=Thermoanaerobacter tengcongensis GN=cinA PE=3 SV=1 CINA_CALS4 - Putative competence-damage inducible protein OS=Caldanaerobacter subterraneus subsp. tengcongensis (... gi\|254479113, gi... - gi\|254479113\|ref\|ZP_05092465.1\| competence/damage-inducible protein CinA N-terminal domain, putative...	399.0	[0..3]	[413..2]
CINA_CALS8 - Putative competence-damage inducible protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43...	395.0	[0..4]	[411..3]
CINAL_NOSP7 - CinA-like protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F5157 PE=3 SV=1	393.0	[0..3]	[411..2]
CINA_BACLD - Putative competence-damage inducible protein OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 /...	392.0	[0..3]	[412..6]
CINA_HALOH - Putative competence-damage inducible protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM...	392.0	[0..4]	[412..3]
CINA_CLOAB - Putative competence-damage inducible protein OS=Clostridium acetobutylicum GN=cinA PE=3 SV=1 CINA_CLOAB - Putative competence-damage inducible protein OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 79...	390.0	[0..3]	[411..2]
gi\|241903212, gi... - gi\|241903212\|ref\|ZP_04787939.1\| competence/damage-inducible protein CinA [Thermoanaerobacter brockii... CINA_THEP3 - Putative competence-damage inducible protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 332...	390.0	[0..3]	[413..2]
gi\|86605264 - gi\|86605264\|ref\|YP_474027.1\| competence/damage-inducible protein CinA [Cyanobacteria bacterium Yello... gi\|86605264, gi\|... - gi\|86605264\|ref\|YP_474027.1\| competence/damage-inducible protein CinA [Synechococcus sp. JA-3-3Ab], ...	389.0	[0..4]	[411..12]
CINAL_TRIEI - CinA-like protein OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_2662 PE=3 SV=1	389.0	[0..4]	[411..3]
gi\|221323087 - gi\|221323087\|ref\|ZP_03604381.1\| competence damage-inducible protein A [Bacillus subtilis subsp. subt... gi\|221318815 - gi\|221318815\|ref\|ZP_03600109.1\| competence damage-inducible protein A [Bacillus subtilis subsp. subt... gi\|221313892 - gi\|221313892\|ref\|ZP_03595697.1\| competence damage-inducible protein A [Bacillus subtilis subsp. subt... CINA_BACSU - Putative competence-damage inducible protein OS=Bacillus subtilis (strain 168) GN=cinA PE=3 SV=3 CINA_BACSU - Putative competence-damage inducible protein OS=Bacillus subtilis GN=cinA PE=3 SV=3	388.0	[0..3]	[412..6]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAEIIAVG TELLLGQIVN SNAAFISQEL AADGIYVYHH TVVGDNPTRL KEVIEIAEKR  60
   61 SDILIFTGGL GPTEDDITKQ ILADHLQKQL VEDEYHMNKI NEYFASRNRT MTENNKLQAV 120
  121 IIKDSVVLNN DYGFAAGMYL KENNHTYVLL PGPPSEMKPM FTKYANPLLL SENGNQNILE 180
  181 SKIMRFFGIG ESQLAADLND LIVNQVNPTI ATYAGDNEVV VRITATAKTK EEASSLVKDT 240
  241 EEEILRRDGT FL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2nqnA
Description:	No description for 2nqnA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.9303555688427	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [253-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYGEVSLPE LVTAMLLEKE LTISAAESFT AGLFQAEIAR FPGISKIFKG GMVTYSEETK  60
   61 QSILQVSPQV IKEKGVVSAE CAKEMAENVS RLCKTDIGIS FTGVAGPDSL EGHPAGTIWI 120
  121 GLSVKGHETE AFQFVYGRDR NHNRRRAVKQ GFQLIKQFLD AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.045757
Match:	2a9sA
Description:	The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.666293440418936	bayes_pls_golite062009
binding	0.169690822508591	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: