YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114645918
Organism:	Pan troglodytes
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114645918.

Description	E-value	Query Range	Subject Range
gi\|38197428 - gi\|38197428\|gb\|AAH61811.1\| Unknown (protein for MGC:72278) [Rattus norvegicus] NP1L1_MOUSE - Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2	0.0	[1..391]	[1..391]
gi\|77404363, gi\|... - gi\|77404363\|ref\|NP_446013.2\| nucleosome assembly protein 1-like 1 [Rattus norvegicus], gi\|62651985\|r...	0.0	[1..391]	[1..391]
NP1L1_PONPY - Nucleosome assembly protein 1-like 1 - Pongo pygmaeus (Orangutan) NP1L1_PONAB - Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1	0.0	[1..391]	[1..391]
gi\|30584347, gi\|... - gi\|61369263\|gb\|AAX43308.1\| nucleosome assembly protein 1-like 1 [synthetic construct], gi\|61369255\|g...	0.0	[1..391]	[1..391]
NP1L1_BOVIN - Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1	0.0	[1..391]	[1..391]
ENSOCUP000000119... - pep:novel chromosome:oryCun2:4:54994549:55014994:-1 gene:ENSOCUG00000013857 transcript:ENSOCUT000000... gi\|109008558, gi... - gi\|109097832\|ref\|XP_001117626.1\| PREDICTED: nucleosome assembly protein 1-like 1 isoform 4 [Macaca m...	0.0	[1..391]	[1..391]
gi\|73977414, gi\|... - gi\|73977428\|ref\|XP_864714.1\| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1 relat... gi\|194226597 - gi\|194226597\|ref\|XP_001914791.1\| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1-r...	0.0	[1..391]	[1..391]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIDNKEQS ELDQDLDDVE EVEEEETGEE TKLKARQLTV QMMQNPQILA ALQERLDGLV  60
   61 ETPTGYIESL PRVVKRRVNA LKNLQVKCAQ IEAKFYEEVH DLERKYAVLY QPLFDKRFEI 120
  121 INAIYEPTEE ECEWKPDEED EISEELKEKA KIEDEKKDEE KEDPKGIPEF WLTVFKNVDL 180
  181 LSDMVQEHDE PILKHLKDIK VKFSDAGQPM SFVLEFHFEP NEYFTNEVLT KTYRMRSEPD 240
  241 DSDPFSFDGP EIMGCTGCQI DWKKGKNVTL KTIKKKQKHK GRGTVRTVTK TVSNDSFFNF 300
  301 FAPPEVPESG DLDDDAEAIL AADFEIGHFL RERIIPRSVL YFTGEAIEDD DDDYDEEGEE 360
  361 ADEEGEEEGD EENDPDYDPK KDQNPAECKQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	2ayuA
Description:	The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
histone binding	4.83364158381373	bayes_pls_golite062009
binding	2.67502047678266	bayes_pls_golite062009
protein binding	2.63726565551155	bayes_pls_golite062009
nucleic acid binding	2.19063722234765	bayes_pls_golite062009
DNA binding	2.02361409111178	bayes_pls_golite062009
sequence-specific DNA binding	1.20960220796519	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: