| Protein: | gi|123998539, gi... |
| Organism: | synthetic construct |
| Length: | 700 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123998539, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..700] | [1..700] |
|
|
0.0 | [1..700] | [1..700] |
|
|
0.0 | [1..700] | [1..700] |
|
|
0.0 | [11..700] | [194..883] |
|
|
0.0 | [1..700] | [1..705] |
|
|
0.0 | [1..700] | [1..704] |
|
|
0.0 | [1..700] | [1..695] |
|
|
0.0 | [1..700] | [1..686] |
|
|
0.0 | [1..625] | [1..625] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MSRRTRCEDL DELHYQDTDS DVPEQRDSKC KVKWTHEEDE QLRALVRQFG QQDWKFLASH 60
61 FPNRTDQQCQ YRWLRVLNPD LVKGPWTKEE DQKVIELVKK YGTKQWTLIA KHLKGRLGKQ 120
121 CRERWHNHLN PEVKKSCWTE EEDRIICEAH KVLGNRWAEI AKMLPGRTDN AVKNHWNSTI 180
181 KRKVDTGG
|
| Detection Method: |  |
| Confidence: | 49.154902 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.0585532752852558 | bayes_pls_golite062009 |
|
Region A: Residues: [189-272] |
1 11 21 31 41 51
| | | | | |
1 FLSESKDCKP PVYLLLELED KDGLQSAQPT EGQGSLLTNW PSVPPTIKEE ENSEEELAAA 60
61 TTSKEQEPIG TDLDAVRTPE PLEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [273-415] |
1 11 21 31 41 51
| | | | | |
1 FPKREDQEGS PPETSLPYKW VVEAANLLIP AVGSSLSEAL DLIESDPDAW CDLSKFDLPE 60
61 EPSAEDSINN SLVQLQASHQ QQVLPPRQPS ALVPSVTEYR LDGHTISDLS RSSRGELIPI 120
121 SPSTEVGGSG IGTPPSVLKR QRK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [416-700] |
1 11 21 31 41 51
| | | | | |
1 RRVALSPVTE NSTSLSFLDS CNSLTPKSTP VKTLPFSPSQ FLNFWNKQDT LELESPSLTS 60
61 TPVCSQKVVV TTPLHRDKTP LHQKHAAFVT PDQKYSMDNT PHTPTPFKNA LEKYGPLKPL 120
121 PQTPHLEEDL KEVLRSEAGI ELIIEDDIRP EKQKRKPGLR RSPIKKVRKS LALDIVDEDV 180
181 KLMMSTLPKS LSLPTTAPSN SSSLTLSGIK EDNSLLNQGF LQAKPEKAAV AQKPRSHFTT 240
241 PAPMSSAWKT VACGGTRDQL FMQEKARQLL GRLKPSHTSR TLILS
|
| Detection Method: | |
| Confidence: | 104.39794 |
| Match: | PF09316.1 |
| Description: | No description for PF09316.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
