YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|90076586, gi|...
Organism: Macaca fascicularis
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|90076586, gi|....

Description E-value Query
Range
Subject
Range
gi|73948285 - gi|73948285|ref|XP_533657.2| PREDICTED: similar to ribosomal protein S19 [Canis familiaris]
280.0 [0..1] [145..142]
gi|114677415 - gi|114677415|ref|XP_512692.2| PREDICTED: similar to ribosomal protein S19 [Pan troglodytes]
276.0 [0..2] [145..88]
gi|60653357 - gi|60653357|gb|AAX29373.1| ribosomal protein S19 [synthetic construct]
273.0 [0..1] [145..1]
RS19_MOUSE - 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3
RS19_RAT - 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3
gi|57716 - gi|57716|emb|CAA36003.1| unnamed protein product [Rattus rattus]
272.0 [0..1] [145..1]
gi|62652556, gi|... - gi|62652556|ref|XP_576285.1| PREDICTED: similar to 40S ribosomal protein S19 [Rattus norvegicus], gi...
269.0 [0..1] [145..1]
gi|16924231 - gi|16924231|gb|AAH17386.1|AAH17386 ribosomal protein S19 [Homo sapiens]
269.0 [0..2] [145..14]

Back

Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVTVKDVN QQEFVRALAA FLKKSGKLKV PEWVDTVKLA KHKELAPYDE NWFYTRAAST  60
   61 ARHLYLRGGA GVGSMTKIYG GRQRNGVMPS HFSRGSKSVA RRVLQALEGL KMVEKDQDGG 120
  121 RKLTPQGQRD LDRIAGQVAA ANKKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.0
Match: 2v7fA
Description: No description for 2v7fA was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.29433336630028 bayes_pls_golite062009
structural molecule activity 5.07265721693681 bayes_pls_golite062009
transcription regulator activity 4.44907471960058 bayes_pls_golite062009
nucleic acid binding 3.97631536825798 bayes_pls_golite062009
DNA binding 3.93431504495991 bayes_pls_golite062009
binding 3.52874320222492 bayes_pls_golite062009
transcription factor activity 3.48782936574155 bayes_pls_golite062009
sequence-specific DNA binding 2.44917636781125 bayes_pls_golite062009
transcription activator activity 2.35901958718112 bayes_pls_golite062009
RNA binding 1.88227222208129 bayes_pls_golite062009
protein binding 1.80415286835431 bayes_pls_golite062009
transcription repressor activity 1.54960543048317 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.2152419300113 bayes_pls_golite062009
transcription factor binding 0.13558561552621 bayes_pls_golite062009
ligase activity 0.104213649382856 bayes_pls_golite062009
mRNA binding 0.036043970189533 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle