YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126510423, gi...
Organism:	Vibrio cholerae NCTC 8457
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126510423, gi....

Description	E-value	Query Range	Subject Range
tr\|D7HFQ0\|D7HFQ0... - Para-aminobenzoate synthase glutamine amidotransferase OS=Vibrio cholerae RC385 GN=VCRC385_03533 PE=... gi\|116217179, gi... - gi\|75824036\|ref\|ZP_00753505.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Vibr...	225.0	[0..1]	[193..1]
gi\|70732911, gi\|... - gi\|70732911\|ref\|YP_262682.1\| anthranilate synthase component II [Pseudomonas fluorescens Pf-5], gi\|6...	224.0	[0..1]	[193..1]
gi\|75819070, gi\|... - gi\|75819070\|ref\|ZP_00749170.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Vibr...	223.0	[0..1]	[193..1]
gi\|77385339, gi\|... - gi\|77461336\|ref\|YP_350843.1\| anthranilate synthase component II [Pseudomonas fluorescens Pf0-1], gi\|...	223.0	[0..1]	[193..1]
gi\|121628676, gi... - gi\|75815104\|ref\|ZP_00745630.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Vibr... gi\|227119057, gi... - gi\|75827869\|ref\|ZP_00757304.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Vibr...	223.0	[0..1]	[193..1]
gi\|121998860, gi... - gi\|88949787\|ref\|ZP_01152402.1\| Glutamine amidotransferase of anthranilate synthase [Halorhodospira h...	223.0	[0..1]	[192..1]
gi\|95108707 - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo... gi\|95108707, gi\|... - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo...	222.0	[0..1]	[193..1]
tr\|E4RE53\|E4RE53... - TrpG OS=Pseudomonas putida (strain BIRD-1) GN=trpG PE=4 SV=1 gi\|26987161, gi\|... - gi\|26987161\|ref\|NP_742586.1\| anthranilate synthase component II [Pseudomonas putida KT2440], gi\|2498...	222.0	[0..1]	[193..1]
tr\|I7C3N6\|I7C3N6... - Anthranilate synthase component II OS=Pseudomonas putida (strain DOT-T1E) GN=trpG PE=4 SV=1 gi\|148545705, gi... - gi\|82739489\|ref\|ZP_00902290.1\| Glutamine amidotransferase of anthranilate synthase [Pseudomonas puti...	222.0	[0..1]	[193..1]
gi\|86165170, gi\|... - gi\|87119694\|ref\|ZP_01075591.1\| glutamine amidotransferase of anthranilate synthase orpara-aminobenzo...	222.0	[0..1]	[192..1]

Back

Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLMIDNYDS FTYNLYQYFC ELGAQVKVVR NDEIDLDGIR ALAPTHLVIS PGPCTPNEAG  60
   61 ISLAAIEAFA GQLPILGVCL GHQAIAQAFG GQVVRARQVM HGKTSPIRHT GQGLFSGLNN 120
  121 PLTVTRYHSL VVKNDTLPEC FELTAWTELS DGSIDEIMGF QHKTLALEAV QFHPESIKTE 180
  181 QGHQLLANFL NRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1qdlB
Description:	Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	4.48164623771604	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
ligase activity	1.77692713123297	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.628648036096965	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: