YRC Public Data Repository - Protein Structure Prediction

Protein:	ATOH7_MOUSE
Organism:	Mus musculus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATOH7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|27227731 - gi\|27227731\|emb\|CAD59066.1\| MyoD2 protein [Salmo salar]	111.0	[0..1]	[148..37]
MYOD1_ONCMY - Myoblast determination protein 1 homolog 1 OS=Oncorhynchus mykiss GN=myod1 PE=2 SV=1	110.0	[0..1]	[148..43]
gi\|37675391 - gi\|37675391\|gb\|AAQ97204.1\| MyoD [Sternopygus macrurus]	110.0	[0..1]	[146..43]
gi\|44887607 - gi\|44887607\|gb\|AAS48083.1\| MyoD [Ictalurus punctatus]	110.0	[0..1]	[148..43]
gi\|87132134 - gi\|87132134\|gb\|ABD24216.1\| myoblast determination protein 1c [Salmo trutta]	109.0	[0..1]	[148..43]
gi\|45510881 - gi\|45510881\|gb\|AAS67038.1\| MyoD [Ictalurus furcatus]	109.0	[0..1]	[139..43]
gi\|45510883 - gi\|45510883\|gb\|AAS67039.1\| MyoD [Ameiurus catus]	108.0	[0..1]	[148..43]
gi\|16611800 - gi\|16611800\|gb\|AAL27367.1\| myogenic factor 5 [Equus caballus]	108.0	[0..2]	[147..43]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSACKPHGP PAGARGAPPC AGAAERAVSC AGPGRLESAA RRRLAANARE RRRMQGLNTA  60
   61 FDRLRRVVPQ WGQDKKLSKY ETLQMALSYI IALTRILAEA ERDWVGLRCE QRGRDHPYLP 120
  121 FPGARLQVDP EPYGQRLFGF QPEPFPMAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.28018660287528	bayes_pls_golite062009
transcription regulator activity	1.87754990073909	bayes_pls_golite062009
DNA binding	1.73664400879211	bayes_pls_golite062009
transcription factor activity	1.6095946900662	bayes_pls_golite062009
nucleic acid binding	1.57122223638621	bayes_pls_golite062009
protein binding	0.78099405089238	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: