YRC Public Data Repository - Protein Structure Prediction

Protein:	RM32_MOUSE
Organism:	Mus musculus
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM32_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109505037, gi... - gi\|109505870\|ref\|XP_001054992.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Rattus n...	267.0	[0..12]	[187..85]
gi\|114613028 - gi\|114613028\|ref\|XP_528025.2\| PREDICTED: mitochondrial ribosomal protein L32 [Pan troglodytes]	260.0	[0..1]	[187..1]
MRPL32 - mitochondrial ribosomal protein L32	259.0	[0..5]	[187..6]
gi\|14582388 - gi\|14582388\|gb\|AAK69482.1\|AF279255_1 heart expressed gene HEG1 [Mus musculus]	256.0	[0..13]	[187..2]
gi\|109066747 - gi\|109066747\|ref\|XP_001097622.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Macaca m...	252.0	[0..5]	[187..6]
RM32_BOVIN - 39S ribosomal protein L32, mitochondrial OS=Bos taurus GN=MRPL32 PE=2 SV=1	245.0	[0..1]	[187..1]
gi\|57099049 - gi\|57099049\|ref\|XP_533077.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Canis famili...	231.0	[0..2]	[187..3]
gi\|50733012 - gi\|50733012\|ref\|XP_418869.1\| PREDICTED: similar to Mitochondrial ribosomal protein L32 [Gallus gallu...	186.0	[0..19]	[187..16]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSLLLLSL PWPVRPGPLQ RCWELLQRQL QQSWSRFVSP PWAPALAVQR PSILTELAHD  60
   61 TCENKENSSF LDSIFWMAAP KNRRTIEVNR CRRRNPQKLI KIKNNIDICP ECGHLKQKHV 120
  121 LCGYCYEKVR QETTKIRQQI GAQEGGPFRA PSVETMVLYT GEKPSEKDQG KRIVERNIKR 180
  181 PSWFTQN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.21
Match:	1j5aM
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.67761199764219	bayes_pls_golite062009
structural molecule activity	9.13063837111868	bayes_pls_golite062009
binding	0.793081751515531	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: