YRC Public Data Repository - Protein Structure Prediction

Protein:	ASF1B_MOUSE
Organism:	Mus musculus
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASF1B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62897721 - gi\|62897721\|dbj\|BAD96800.1\| ASF1 anti-silencing function 1 homolog B variant [Homo sapiens]	347.0	[0..1]	[202..1]
gi\|109123682 - gi\|109123682\|ref\|XP_001111289.1\| PREDICTED: similar to anti-silencing function 1B [Macaca mulatta]	344.0	[0..1]	[202..1]
gi\|109507943, gi... - gi\|165971645\|gb\|AAI58706.1\| ASF1 anti-silencing function 1 homolog B (S. cerevisiae) [Rattus norvegi...	344.0	[0..1]	[202..1]
ASF1B_BOVIN - Histone chaperone ASF1B OS=Bos taurus GN=ASF1B PE=2 SV=1	342.0	[0..1]	[202..1]
gi\|26346659 - gi\|26346659\|dbj\|BAC36978.1\| unnamed protein product [Mus musculus]	339.0	[0..1]	[202..1]
gi\|57101878 - gi\|57101878\|ref\|XP_542021.1\| PREDICTED: similar to anti-silencing function 1B [Canis familiaris]	335.0	[0..1]	[202..1]
AS1BA_DANRE - Histone chaperone asf1b-A OS=Danio rerio GN=asf1ba PE=2 SV=1	332.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVSVLNVA VLENPSPFHS PFRFEISFEC SEALSDDLEW KIIYVGSAES EEFDQILDSV  60
   61 LVGPVPAGRH MFVFQADAPN PSLIPETDAV GVTVVLITCT YHGQEFIRVG YYVNNEYPDP 120
  121 ELRENPPPKP DFSQLQRNIL ASNPRVTRFH INWDNNPDSL EAIENQDPNV DFSLSLSCTP 180
  181 VKSLGLPSCI PGLLPENSMD CI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.522879
Match:	2io5A
Description:	No description for 2io5A was found.

Predicted functions:

Term	Confidence	Notes
histone binding	4.79132023578789	bayes_pls_golite062009
binding	2.53764463034371	bayes_pls_golite062009
transcription regulator activity	2.5158947712633	bayes_pls_golite062009
protein binding	2.37105076370775	bayes_pls_golite062009
chromatin binding	0.27260556482582	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: