YRC Public Data Repository - Protein Structure Prediction

Protein:	FIGLA_MOUSE
Organism:	Mus musculus
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIGLA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|84796057, gi\|... - gi\|84796057\|gb\|ABC26029.2\| myogenin [Salmo salar], gi\|185135535\|ref\|NP_001117072.1\| myogenin [Salmo ...	116.0	[0..23]	[190..64]
gi\|19924254 - gi\|19924254\|gb\|AAK58608.2\|AF270790_1 muscle regulatory protein MyoD [Oreochromis aureus]	116.0	[0..26]	[189..76]
gi\|19110897 - gi\|19110897\|gb\|AAL85337.1\|AF478568_1 myogenic factor MYOD1 [Sparus aurata]	114.0	[0..21]	[189..72]
gi\|62869863 - gi\|62869863\|gb\|AAY18082.1\| myogenic factor MyoD1 [Hippoglossus hippoglossus]	114.0	[0..21]	[188..44]
gi\|3808158, gi\|1... - gi\|3808158\|emb\|CAA87010.1\| TMyogenin protein [Oncorhynchus mykiss], gi\|185135658\|ref\|NP_001118199.1\|...	114.0	[0..23]	[190..64]
gi\|86347, gi\|628... - pir\|\|A32872 myogenic factor CMD1, embryonic skeletal muscle - chicken, gi\|62869\|emb\|CAA34315.1\| unna...	113.0	[0..15]	[189..56]
MYOD1_TAKRU - Myoblast determination protein 1 homolog OS=Takifugu rubripes GN=myod PE=2 SV=1	112.0	[0..21]	[172..71]
gi\|18859055, gi\|... - gi\|22035405\|gb\|AAM82616.1\| myogenin [Danio rerio], gi\|18859055\|ref\|NP_571081.1\| myogenin [Danio reri...	112.0	[0..35]	[190..78]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTAPASPEP FLVTPQAEVL EELIQAQMGP LPRLAAICRL KRLPSGGYST TDDLHLVLER  60
   61 RRVANAKERE RIKNLNRGFA KLKALVPFLP QSRKPSKVDI LKGATEYIQI LGCVLEEAKV 120
  121 SEKQSPEEQT HSGRPSDPHV SSTRELLGNA TQPTSCASGL KKEEEGPWAY AGHSEPLYSY 180
  181 HQSTVPETRS YFTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	3.38152275390446	bayes_pls_golite062009
transcription factor activity	3.04280835647305	bayes_pls_golite062009
DNA binding	2.90141674767619	bayes_pls_golite062009
nucleic acid binding	2.47998473034448	bayes_pls_golite062009
transcription regulator activity	2.37053987886767	bayes_pls_golite062009
transcription activator activity	1.74319543447013	bayes_pls_golite062009
protein binding	1.62223000080562	bayes_pls_golite062009
transcription factor binding	1.43375582831514	bayes_pls_golite062009
sequence-specific DNA binding	1.28591007735391	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.25959178854241	bayes_pls_golite062009
transcription cofactor activity	0.58915685754167	bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding	0.57893998216372	bayes_pls_golite062009
transcription coactivator activity	0.400231642545219	bayes_pls_golite062009
promoter binding	0.23048060885883	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: